Information for 10-KGCCAGGCRGACY (Motif 17)

A C T G A C T G A G T C G T A C C G T A A C T G A C T G G T A C C T A G A C T G C T G A G T A C A G C T
Reverse Opposite:
T C G A A C T G G A C T A G T C A G T C A C T G A G T C A G T C A C G T A C T G A C T G A G T C G T A C
p-value:1e-9
log p-value:-2.239e+01
Information Content per bp:1.837
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif9.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets53.2 +/- 13.2bp
Average Position of motif in Background36.9 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-KGCCAGGCRGACY
TTGCCAAG------
 A C G T A C T G A C T G A G T C G T A C C G T A A C T G A C T G G T A C C T A G A C T G C T G A G T A C A G C T
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--KGCCAGGCRGACY
CGTGCCAAG------
 A C G T A C G T A C T G A C T G A G T C G T A C C G T A A C T G A C T G G T A C C T A G A C T G C T G A G T A C A G C T
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:KGCCAGGCRGACY--
GGTCANNGTGACCTN
 A C T G A C T G A G T C G T A C C G T A A C T G A C T G G T A C C T A G A C T G C T G A G T A C A G C T A C G T A C G T
C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T

ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer

Match Rank:4
Score:0.56
Offset:2
Orientation:forward strand
Alignment:KGCCAGGCRGACY
--VCAGGTRDRY-
 A C T G A C T G A G T C G T A C C G T A A C T G A C T G G T A C C T A G A C T G C T G A G T A C A G C T
A C G T A C G T T G C A G T A C C G T A A T C G A C T G A C G T C T A G C G A T T C G A A G T C A C G T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:KGCCAGGCRGACY
TGCCAA-------
 A C T G A C T G A G T C G T A C C G T A A C T G A C T G G T A C C T A G A C T G C T G A G T A C A G C T
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ESR2/MA0258.2/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-KGCCAGGCRGACY-
AGGNCANNGTGACCT
 A C G T A C T G A C T G A G T C G T A C C G T A A C T G A C T G G T A C C T A G A C T G C T G A G T A C A G C T A C G T
C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T

Rfx1/MA0509.1/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--KGCCAGGCRGACY
GTTGCCATGGNAAC-
 A C G T A C G T A C T G A C T G A G T C G T A C C G T A A C T G A C T G G T A C C T A G A C T G C T G A G T A C A G C T
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:KGCCAGGCRGACY
--CCAGACAG---
 A C T G A C T G A G T C G T A C C G T A A C T G A C T G G T A C C T A G A C T G C T G A G T A C A G C T
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-KGCCAGGCRGACY
ATGCCAGACN----
 A C G T A C T G A C T G A G T C G T A C C G T A A C T G A C T G G T A C C T A G A C T G C T G A G T A C A G C T
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:10
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---KGCCAGGCRGACY
AGGTGNCAGACAG---
 A C G T A C G T A C G T A C T G A C T G A G T C G T A C C G T A A C T G A C T G G T A C C T A G A C T G C T G A G T A C A G C T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T