Information for 9-ACAGCAGGGTGAA (Motif 10)

C T G A A G T C C T G A A C T G G T A C C G T A A C T G A C T G T C A G C A G T A C T G G C T A C T G A
Reverse Opposite:
A G C T C A G T A G T C G T C A A G T C A G T C A G T C A C G T A C T G A G T C A G C T C T A G A G C T
p-value:1e-13
log p-value:-3.038e+01
Information Content per bp:1.823
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.60%
Number of Background Sequences with motif22.0
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets64.0 +/- 24.5bp
Average Position of motif in Background56.5 +/- 38.9bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-ACAGCAGGGTGAA
CACAGCAGGGGG--
 A C G T C T G A A G T C C T G A A C T G G T A C C G T A A C T G A C T G T C A G C A G T A C T G G C T A C T G A
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--ACAGCAGGGTGAA
DCHCAGCAGGRGGCC
 A C G T A C G T C T G A A G T C C T G A A C T G G T A C C G T A A C T G A C T G T C A G C A G T A C T G G C T A C T G A
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

ZIC1/MA0696.1/Jaspar

Match Rank:3
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-ACAGCAGGGTGAA
CACAGCGGGGGGTC
 A C G T C T G A A G T C C T G A A C T G G T A C C G T A A C T G A C T G T C A G C A G T A C T G G C T A C T G A
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

ZIC3/MA0697.1/Jaspar

Match Rank:4
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--ACAGCAGGGTGAA
NCGCAGCGGGGGGTC
 A C G T A C G T C T G A A G T C C T G A A C T G G T A C C G T A A C T G A C T G T C A G C A G T A C T G G C T A C T G A
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

ZIC4/MA0751.1/Jaspar

Match Rank:5
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--ACAGCAGGGTGAA
NCNCAGCGGGGGGTC
 A C G T A C G T C T G A A G T C C T G A A C T G G T A C C G T A A C T G A C T G T C A G C A G T A C T G G C T A C T G A
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----ACAGCAGGGTGAA
CCACACAGCAGGAGA--
 A C G T A C G T A C G T A C G T C T G A A G T C C T G A A C T G G T A C C G T A A C T G A C T G T C A G C A G T A C T G G C T A C T G A
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:7
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----ACAGCAGGGTGAA
CCACACAGCAGGAGA--
 A C G T A C G T A C G T A C G T C T G A A G T C C T G A A C T G G T A C C G T A A C T G A C T G T C A G C A G T A C T G G C T A C T G A
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:8
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--ACAGCAGGGTGAA
DCTCAGCAGG-----
 A C G T A C G T C T G A A G T C C T G A A C T G G T A C C G T A A C T G A C T G T C A G C A G T A C T G G C T A C T G A
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:9
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----ACAGCAGGGTGAA
GAGCACAGCAGGACA--
 A C G T A C G T A C G T A C G T C T G A A G T C C T G A A C T G G T A C C G T A A C T G A C T G T C A G C A G T A C T G G C T A C T G A
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:10
Score:0.64
Offset:3
Orientation:forward strand
Alignment:ACAGCAGGGTGAA
---GGAGGGGGAA
 C T G A A G T C C T G A A C T G G T A C C G T A A C T G A C T G T C A G C A G T A C T G G C T A C T G A
A C G T A C G T A C G T A C T G C A G T G T C A A C T G A C T G A T C G A C T G C A T G C T G A C T G A