Information for 10-CCCTGCTGTAATA (Motif 12)

A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G C G A T T C G A C G T A A G C T C G T A
Reverse Opposite:
A C G T C T G A A C G T A C G T C G T A A G T C C G T A A C T G A G T C C G T A A C T G A C T G A C T G
p-value:1e-11
log p-value:-2.533e+01
Information Content per bp:1.914
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.2 +/- 20.9bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--CCCTGCTGTAATA
CCCCCTGCTGTG---
 A C G T A C G T A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G C G A T T C G A C G T A A G C T C G T A
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----CCCTGCTGTAATA
GGCCYCCTGCTGDGH--
 A C G T A C G T A C G T A C G T A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G C G A T T C G A C G T A A G C T C G T A
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CCCTGCTGTAATA
-CCTGCTGAGH--
 A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G C G A T T C G A C G T A A G C T C G T A
A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CCCTGCTGTAATA
TNTCCTGCTGTGNNG
 A C G T A C G T A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G C G A T T C G A C G T A A G C T C G T A
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CCCTGCTGTAATA
NNTCCTGCTGTGNNN
 A C G T A C G T A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G C G A T T C G A C G T A A G C T C G T A
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CCCTGCTGTAATA
TCNCCTGCTGNGNNN
 A C G T A C G T A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G C G A T T C G A C G T A A G C T C G T A
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

ZIC1/MA0696.1/Jaspar

Match Rank:7
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CCCTGCTGTAATA
GACCCCCCGCTGTG---
 A C G T A C G T A C G T A C G T A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G C G A T T C G A C G T A A G C T C G T A
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G A C G T A C G T A C G T

Rhox11/MA0629.1/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CCCTGCTGTAATA---
AAGACGCTGTAAAGCGA
 A C G T A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G C G A T T C G A C G T A A G C T C G T A A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0157.1_Rhox11_1/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CCCTGCTGTAATA---
AAGACGCTGTAAAGCGA
 A C G T A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G C G A T T C G A C G T A A G C T C G T A A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:10
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CCCTGCTGTAATA
-CCAGCTGTTN--
 A G T C A G T C A G T C A C G T A C T G A G T C A C G T A C T G C G A T T C G A C G T A A G C T C G T A
A C G T T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A A C G T A C G T