Information for 14-CTYTATTCCG (Motif 41)

A G T C A C G T A G T C A C G T G T C A A C G T A C G T G T A C A T G C A C T G
Reverse Opposite:
A G T C A T C G A C T G T G C A C G T A A C G T C G T A T C A G C G T A C T A G
p-value:1e-6
log p-value:-1.385e+01
Information Content per bp:1.770
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.30%
Number of Background Sequences with motif274.2
Percentage of Background Sequences with motif0.57%
Average Position of motif in Targets54.6 +/- 20.1bp
Average Position of motif in Background51.5 +/- 26.6bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CTYTATTCCG
NTTTTATGAC-
 A C G T A G T C A C G T A G T C A C G T G T C A A C G T A C G T G T A C A T G C A C T G
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T

CDX1/MA0878.1/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CTYTATTCCG
TTTTATTGC-
 A G T C A C G T A G T C A C G T G T C A A C G T A C G T G T A C A T G C A C T G
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T

CDX2/MA0465.1/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CTYTATTCCG-
TTTTATGGCTN
 A G T C A C G T A G T C A C G T G T C A A C G T A C G T G T A C A T G C A C T G A C G T
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

HOXA10/MA0899.1/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTYTATTCCG
NTTTTATTACN
 A C G T A G T C A C G T A G T C A C G T G T C A A C G T A C G T G T A C A T G C A C T G
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

PH0013.1_Cdx2/Jaspar

Match Rank:5
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CTYTATTCCG---
NAATTTTATTACCNNN
 A C G T A C G T A C G T A G T C A C G T A G T C A C G T G T C A A C G T A C G T G T A C A T G C A C T G A C G T A C G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CTYTATTCCG--
--HACTTCCGGY
 A G T C A C G T A G T C A C G T G T C A A C G T A C G T G T A C A T G C A C T G A C G T A C G T
A C G T A C G T G A T C T C G A A G T C C G A T C G A T A G T C A T G C A C T G A T C G G A C T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CTYTATTCCG
YCTTTGTTCC-
 A C G T A G T C A C G T A G T C A C G T G T C A A C G T A C G T G T A C A T G C A C T G
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T

PH0046.1_Hoxa10/Jaspar

Match Rank:8
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CTYTATTCCG--
TNAATTTTATTACCTN
 A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C G T G T C A A C G T A C G T G T A C A T G C A C T G A C G T A C G T
G C A T C A T G G T C A C G T A C G A T C G A T G C A T C G A T C G T A G A C T C A G T C T G A A G T C T G A C C A G T G T C A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CTYTATTCCG
DGWTTTATGRCN
 A C G T A C G T A G T C A C G T A G T C A C G T G T C A A C G T A C G T G T A C A T G C A C T G
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

Hoxd9/MA0913.1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTYTATTCCG
TTTTTATTGC-
 A C G T A G T C A C G T A G T C A C G T G T C A A C G T A C G T G T A C A T G C A C T G
C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C A C G T