Information for 10-CYTTGMMYTAGAT (Motif 17)

A G T C G A C T A C G T A C G T A C T G G T A C G T A C A G T C A C G T C G T A A C T G C G T A A C G T
Reverse Opposite:
C G T A A C G T A G T C A C G T C G T A C T A G A C T G C A T G A G T C C G T A C G T A C T G A A C T G
p-value:1e-11
log p-value:-2.543e+01
Information Content per bp:1.874
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.3 +/- 24.4bp
Average Position of motif in Background60.1 +/- 10.7bp
Strand Bias (log2 ratio + to - strand density)-2.3
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA(var.2)/MA0072.1/Jaspar

Match Rank:1
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CYTTGMMYTAGAT---
--TTGACCTANTTATN
 A G T C G A C T A C G T A C G T A C T G G T A C G T A C A G T C A C G T C G T A A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:2
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CYTTGMMYTAGAT
---TGACCTARTT
 A G T C G A C T A C G T A C G T A C T G G T A C G T A C A G T C A C G T C G T A A C T G C G T A A C G T
A C G T A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

RORA/MA0071.1/Jaspar

Match Rank:3
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CYTTGMMYTAGAT
---TGACCTTGAT
 A G T C G A C T A C G T A C G T A C T G G T A C G T A C A G T C A C G T C G T A A C T G C G T A A C G T
A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:4
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CYTTGMMYTAGAT
TGACCTTGACCT----
 A C G T A C G T A C G T A G T C G A C T A C G T A C G T A C T G G T A C G T A C A G T C A C G T C G T A A C T G C G T A A C G T
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:5
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CYTTGMMYTAGAT
TGACCTTGACCT----
 A C G T A C G T A C G T A G T C G A C T A C G T A C G T A C T G G T A C G T A C A G T C A C G T C G T A A C T G C G T A A C G T
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T A C G T A C G T A C G T

PB0082.1_Tcf3_1/Jaspar

Match Rank:6
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----CYTTGMMYTAGAT
NNTTCCTTTGATCTANA-
 A C G T A C G T A C G T A C G T A C G T A G T C G A C T A C G T A C G T A C T G G T A C G T A C A G T C A C G T C G T A A C T G C G T A A C G T
C G A T C G A T C G A T A G C T A G T C A G T C G C A T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T C T G A A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CYTTGMMYTAGAT
CCTTTGATGT----
 A C G T A G T C G A C T A C G T A C G T A C T G G T A C G T A C A G T C A C G T C G T A A C T G C G T A A C G T
A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T A C G T A C G T A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:8
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CYTTGMMYTAGAT
TGACCTTTGCCCTAN--
 A C G T A C G T A C G T A C G T A G T C G A C T A C G T A C G T A C T G G T A C G T A C A G T C A C G T C G T A A C T G C G T A A C G T
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C A C G T A C G T

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CYTTGMMYTAGAT
CCTTTGAWGT----
 A C G T A G T C G A C T A C G T A C G T A C T G G T A C G T A C A G T C A C G T C G T A A C T G C G T A A C G T
A T G C A G T C A C G T A C G T A C G T A C T G C G T A C G T A A T C G A C G T A C G T A C G T A C G T A C G T

PB0083.1_Tcf7_1/Jaspar

Match Rank:10
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----CYTTGMMYTAGAT
NNTTCCTTTGATCTNNA-
 A C G T A C G T A C G T A C G T A C G T A G T C G A C T A C G T A C G T A C T G G T A C G T A C A G T C A C G T C G T A A C T G C G T A A C G T
C G A T C G A T C A G T A G C T A G T C A G T C G C A T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T T G C A A C G T