Information for 13-ATGTGRCKTAATAAAA (Motif 13)

T C G A C G A T T A C G A C G T A C T G C T G A A G T C A C G T C G A T G T C A C G T A C A G T G C T A C G T A G C T A G T C A
Reverse Opposite:
A C G T C A G T A C G T C A G T G T C A C G A T A C G T C G T A T G C A C T A G G A C T G T A C C G T A A G T C G C T A A C G T
p-value:1e-12
log p-value:-2.858e+01
Information Content per bp:1.680
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.43%
Number of Background Sequences with motif121.1
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets37.6 +/- 24.1bp
Average Position of motif in Background46.7 +/- 23.6bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0075.1_Hoxd10/Jaspar

Match Rank:1
Score:0.67
Offset:4
Orientation:forward strand
Alignment:ATGTGRCKTAATAAAA-----
----AATGCAATAAAATTTAT
 T C G A C G A T T A C G A C G T A C T G C T G A A G T C A C G T C G A T G T C A C G T A C A G T G C T A C G T A G C T A G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

PH0046.1_Hoxa10/Jaspar

Match Rank:2
Score:0.66
Offset:4
Orientation:forward strand
Alignment:ATGTGRCKTAATAAAA----
----TAGGTAATAAAATTCA
 T C G A C G A T T A C G A C G T A C T G C T G A A G T C A C G T C G A T G T C A C G T A C A G T G C T A C G T A G C T A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A

HOXA10/MA0899.1/Jaspar

Match Rank:3
Score:0.66
Offset:6
Orientation:forward strand
Alignment:ATGTGRCKTAATAAAA-
------GGTAATAAAAA
 T C G A C G A T T A C G A C G T A C T G C T G A A G T C A C G T C G A T G T C A C G T A C A G T G C T A C G T A G C T A G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.66
Offset:7
Orientation:forward strand
Alignment:ATGTGRCKTAATAAAA-
-------GTCATAAAAN
 T C G A C G A T T A C G A C G T A C T G C T G A A G T C A C G T C G A T G T C A C G T A C A G T G C T A C G T A G C T A G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

HOXD13/MA0909.1/Jaspar

Match Rank:5
Score:0.65
Offset:7
Orientation:forward strand
Alignment:ATGTGRCKTAATAAAA-
-------CCAATAAAAA
 T C G A C G A T T A C G A C G T A C T G C T G A A G T C A C G T C G A T G T C A C G T A C A G T G C T A C G T A G C T A G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.65
Offset:6
Orientation:forward strand
Alignment:ATGTGRCKTAATAAAA
------NCYAATAAAA
 T C G A C G A T T A C G A C G T A C T G C T G A A G T C A C G T C G A T G T C A C G T A C A G T G C T A C G T A G C T A G T C A
A C G T A C G T A C G T A C G T A C G T A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.64
Offset:7
Orientation:forward strand
Alignment:ATGTGRCKTAATAAAA
-------GCAATAAAA
 T C G A C G A T T A C G A C G T A C T G C T G A A G T C A C G T C G A T G T C A C G T A C A G T G C T A C G T A G C T A G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

PH0078.1_Hoxd13/Jaspar

Match Rank:8
Score:0.64
Offset:4
Orientation:forward strand
Alignment:ATGTGRCKTAATAAAA----
----CTACCAATAAAATTCT
 T C G A C G A T T A C G A C G T A C T G C T G A A G T C A C G T C G A T G T C A C G T A C A G T G C T A C G T A G C T A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

PH0012.1_Cdx1/Jaspar

Match Rank:9
Score:0.63
Offset:3
Orientation:forward strand
Alignment:ATGTGRCKTAATAAAA---
---TAAGGTAATAAAATTA
 T C G A C G A T T A C G A C G T A C T G C T G A A G T C A C G T C G A T G T C A C G T A C A G T G C T A C G T A G C T A G T C A A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A

PH0057.1_Hoxb13/Jaspar

Match Rank:10
Score:0.63
Offset:4
Orientation:forward strand
Alignment:ATGTGRCKTAATAAAA----
----AACCCAATAAAATTCG
 T C G A C G A T T A C G A C G T A C T G C T G A A G T C A C G T C G A T G T C A C G T A C A G T G C T A C G T A G C T A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G