Information for 17-GCAACCACACGAD (Motif 27)

C T A G A G T C C G T A C T G A A G T C A G T C C G T A A G T C C G T A A T G C A C T G G T C A C A G T
Reverse Opposite:
G C T A A C G T G T A C A T C G G C A T C T A G A C G T A C T G C T A G A G C T A C G T A C T G A G T C
p-value:1e-8
log p-value:-1.942e+01
Information Content per bp:1.758
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif6.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets48.1 +/- 27.7bp
Average Position of motif in Background19.0 +/- 6.9bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GLI2/MA0734.1/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GCAACCACACGAD
GCGACCACACTG-
 C T A G A G T C C G T A C T G A A G T C A G T C C G T A A G T C C G T A A T G C A C T G G T C A C A G T
C T A G T G A C C A T G T G C A A G T C A T G C G T C A A T G C T G C A G T A C C G A T C T A G A C G T

Dux/MA0611.1/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GCAACCACACGAD
CCAATCAA-----
 C T A G A G T C C G T A C T G A A G T C A G T C C G T A A G T C C G T A A T G C A C T G G T C A C A G T
A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCAACCACACGAD
NWAACCACADNN-
 C T A G A G T C C G T A C T G A A G T C A G T C C G T A A G T C C G T A A T G C A C T G G T C A C A G T
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GCAACCACACGAD
-AAACCACANN--
 C T A G A G T C C G T A C T G A A G T C A G T C C G T A A G T C C G T A A T G C A C T G G T C A C A G T
A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A A C G T A C G T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GCAACCACACGAD
NAAACCACAG---
 C T A G A G T C C G T A C T G A A G T C A G T C C G T A A G T C C G T A A T G C A C T G G T C A C A G T
T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G A C G T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GCAACCACACGAD
-AAACCACAGAN-
 C T A G A G T C C G T A C T G A A G T C A G T C C G T A A G T C C G T A A T G C A C T G G T C A C A G T
A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GCAACCACACGAD
-AAACCACAGC--
 C T A G A G T C C G T A C T G A A G T C A G T C C G T A A G T C C G T A A T G C A C T G G T C A C A G T
A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GCAACCACACGAD
CAAATCACTG---
 C T A G A G T C C G T A C T G A A G T C A G T C C G T A A G T C C G T A A T G C A C T G G T C A C A G T
A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G A C G T A C G T A C G T

PH0037.1_Hdx/Jaspar

Match Rank:9
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----GCAACCACACGAD
AAGGCGAAATCATCGCA-
 A C G T A C G T A C G T A C G T A C G T C T A G A G T C C G T A C T G A A G T C A G T C C G T A A G T C C G T A A T G C A C T G G T C A C A G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:10
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GCAACCACACGAD
--MRSCACTYAA-
 C T A G A G T C C G T A C T G A A G T C A G T C C G T A A G T C C G T A A T G C A C T G G T C A C A G T
A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T