Information for 5-MSGGCCCTGAMMT (Motif 5)

G T C A A T G C A C T G T C A G A G T C A G T C A G T C A C G T A C T G C G T A G T A C G T A C A C G T
Reverse Opposite:
C G T A A C T G A C T G A C G T A G T C G T C A A C T G A C T G C T A G A G T C A G T C A T C G A C G T
p-value:1e-10
log p-value:-2.476e+01
Information Content per bp:1.859
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.9 +/- 18.6bp
Average Position of motif in Background62.6 +/- 15.6bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:1
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:MSGGCCCTGAMMT
-TGACCTTGACCT
 G T C A A T G C A C T G T C A G A G T C A G T C A G T C A C G T A C T G C G T A G T A C G T A C A C G T
A C G T G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:MSGGCCCTGAMMT
-TGACCTTGACCT
 G T C A A T G C A C T G T C A G A G T C A G T C A G T C A C G T A C T G C G T A G T A C G T A C A C G T
A C G T G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T

Nr5a2/MA0505.1/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-MSGGCCCTGAMMT-
GCTGACCTTGAACTN
 A C G T G T C A A T G C A C T G T C A G A G T C A G T C A G T C A C G T A C T G C G T A G T A C G T A C A C G T A C G T
T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:MSGGCCCTGAMMT
-TGACCTTGAN--
 G T C A A T G C A C T G T C A G A G T C A G T C A G T C A C G T A C T G C G T A G T A C G T A C A C G T
A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:MSGGCCCTGAMMT
RGGGCACTAACY-
 G T C A A T G C A C T G T C A G A G T C A G T C A G T C A C G T A C T G C G T A G T A C G T A C A C G T
T C G A C A T G C A T G T A C G G T A C T C G A A G T C C A G T C T G A C G T A A G T C G A C T A C G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-MSGGCCCTGAMMT
NAGGTCANTGACCT
 A C G T G T C A A T G C A C T G T C A G A G T C A G T C A G T C A C G T A C T G C G T A G T A C G T A C A C G T
T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.58
Offset:7
Orientation:reverse strand
Alignment:MSGGCCCTGAMMT--
-------TGACCTYA
 G T C A A T G C A C T G T C A G A G T C A G T C A G T C A C G T A C T G C G T A G T A C G T A C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:MSGGCCCTGAMMT---
------CTGACCTTTG
 G T C A A T G C A C T G T C A G A G T C A G T C A G T C A C G T A C T G C G T A G T A C G T A C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G

RORA/MA0071.1/Jaspar

Match Rank:9
Score:0.58
Offset:7
Orientation:reverse strand
Alignment:MSGGCCCTGAMMT----
-------TGACCTTGAT
 G T C A A T G C A C T G T C A G A G T C A G T C A G T C A C G T A C T G C G T A G T A C G T A C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:10
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:MSGGCCCTGAMMT
-------TGACCT
 G T C A A T G C A C T G T C A G A G T C A G T C A G T C A C G T A C T G C G T A G T A C G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T