Information for 1-GCACGTACVC (Motif 1)

C A T G A G T C C G T A A G T C A C T G A G C T G T C A A T G C T A G C T A G C
Reverse Opposite:
A T C G A T C G T A C G C A G T C T G A A G T C A C T G A C G T A C T G G T A C
p-value:1e-145
log p-value:-3.357e+02
Information Content per bp:1.728
Number of Target Sequences with motif287.0
Percentage of Target Sequences with motif37.03%
Number of Background Sequences with motif2458.6
Percentage of Background Sequences with motif5.87%
Average Position of motif in Targets54.0 +/- 20.6bp
Average Position of motif in Background50.2 +/- 45.5bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:1
Score:0.98
Offset:0
Orientation:forward strand
Alignment:GCACGTACVC
GCACGTACCC
 C A T G A G T C C G T A A G T C A C T G A G C T G T C A A T G C T A G C T A G C
C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:2
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:GCACGTACVC
GCACGTAY--
 C A T G A G T C C G T A A G T C A C T G A G C T G T C A A T G C T A G C T A G C
C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T A C G T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:3
Score:0.95
Offset:-1
Orientation:reverse strand
Alignment:-GCACGTACVC
BGCACGTA---
 A C G T C A T G A G T C C G T A A G T C A C T G A G C T G T C A A T G C T A G C T A G C
A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A A C G T A C G T A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:4
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:GCACGTACVC
GCACGTNC--
 C A T G A G T C C G T A A G T C A C T G A G C T G T C A A T G C T A G C T A G C
A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C A C G T A C G T

Arnt/MA0004.1/Jaspar

Match Rank:5
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:GCACGTACVC
-CACGTG---
 C A T G A G T C C G T A A G T C A C T G A G C T G T C A A T G C T A G C T A G C
A C G T A G T C C G T A A G T C A C T G A G C T A C T G A C G T A C G T A C G T

bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--GCACGTACVC
NGKCACGTGM--
 A C G T A C G T C A T G A G T C C G T A A G T C A C T G A G C T G T C A A T G C T A G C T A G C
T C G A T C A G C A T G A G T C C G T A A G T C C T A G A C G T A C T G G T A C A C G T A C G T

MNT/MA0825.1/Jaspar

Match Rank:7
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-GCACGTACVC
NGCACGTGNT-
 A C G T C A T G A G T C C G T A A G T C A C T G A G C T G T C A A T G C T A G C T A G C
C T A G A C T G G T A C G T C A A G T C T C A G C G A T C A T G A T C G G A C T A C G T

NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer

Match Rank:8
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:GCACGTACVC
-CACGTGBN-
 C A T G A G T C C G T A A G T C A C T G A G C T G T C A A T G C T A G C T A G C
A C G T G T A C C T G A A G T C C T A G G C A T C A T G A C G T G C T A A C G T

BHLHE40/MA0464.2/Jaspar

Match Rank:9
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-GCACGTACVC
ATCACGTGAC-
 A C G T C A T G A G T C C G T A A G T C A C T G A G C T G T C A A T G C T A G C T A G C
T G C A C A G T G T A C T G C A G A T C T C A G G A C T A C T G G T C A G A T C A C G T

Id2/MA0617.1/Jaspar

Match Rank:10
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:GCACGTACVC
TCACGTGC--
 C A T G A G T C C G T A A G T C A C T G A G C T G T C A A T G C T A G C T A G C
G A C T A G T C C G T A A G T C A C T G A C G T A C T G A G T C A C G T A C G T