Information for 3-CCGVGGTGTTAAT (Motif 6)

A G T C A G T C C T A G T C G A A C T G C T A G A C G T A C T G A C G T A G C T C T G A G T C A A C G T
Reverse Opposite:
C G T A A C G T A G C T C T G A C G T A A G T C C G T A A G T C A G T C A C G T A G T C A C T G C T A G
p-value:1e-8
log p-value:-2.040e+01
Information Content per bp:1.804
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.97%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.7 +/- 23.5bp
Average Position of motif in Background71.1 +/- 6.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.75
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:1
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:CCGVGGTGTTAAT
---AGGTGTTAAT
 A G T C A G T C C T A G T C G A A C T G C T A G A C G T A C T G A C G T A G C T C T G A G T C A A C G T
A C G T A C G T A C G T C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T

TBX2/MA0688.1/Jaspar

Match Rank:2
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CCGVGGTGTTAAT
--AAGGTGTGAAA
 A G T C A G T C C T A G T C G A A C T G C T A G A C G T A C T G A C G T A G C T C T G A G T C A A C G T
A C G T A C G T C G T A C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A C G T A C G T A

TBX5/MA0807.1/Jaspar

Match Rank:3
Score:0.66
Offset:3
Orientation:forward strand
Alignment:CCGVGGTGTTAAT
---AGGTGTGA--
 A G T C A G T C C T A G T C G A A C T G C T A G A C G T A C T G A C G T A G C T C T G A G T C A A C G T
A C G T A C G T A C G T C T G A T C A G A C T G A C G T C T A G A G C T A C T G C T G A A C G T A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.66
Offset:3
Orientation:forward strand
Alignment:CCGVGGTGTTAAT
---AGGTGTCA--
 A G T C A G T C C T A G T C G A A C T G C T A G A C G T A C T G A C G T A G C T C T G A G T C A A C G T
A C G T A C G T A C G T C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T A C G T

TBX4/MA0806.1/Jaspar

Match Rank:5
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CCGVGGTGTTAAT
---AGGTGTGA--
 A G T C A G T C C T A G T C G A A C T G C T A G A C G T A C T G A C G T A G C T C T G A G T C A A C G T
A C G T A C G T A C G T C T G A T C A G T A C G A G C T A C T G G A C T A C T G C T G A A C G T A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:6
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CCGVGGTGTTAAT
--AAGGTGTKAA-
 A G T C A G T C C T A G T C G A A C T G C T A G A C G T A C T G A C G T A G C T C T G A G T C A A C G T
A C G T A C G T C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T

PB0117.1_Eomes_2/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CCGVGGTGTTAAT--
GCGGAGGTGTCGCCTC
 A C G T A G T C A G T C C T A G T C G A A C T G C T A G A C G T A C T G A C G T A G C T C T G A G T C A A C G T A C G T A C G T
T A C G A T C G T C A G C T A G C T G A T A C G A T C G A G C T T C A G C G A T G A T C A C T G T A G C A G T C A G C T T A G C

PH0164.1_Six4/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CCGVGGTGTTAAT---
TNNNNGGTGTCATNTNT
 A C G T A G T C A G T C C T A G T C G A A C T G C T A G A C G T A C T G A C G T A G C T C T G A G T C A A C G T A C G T A C G T A C G T
A G C T T C A G T C G A C A G T C T G A T C A G A C T G A C G T C T A G A C G T G T A C C T G A C G A T C A G T G A C T G T C A C A G T

MGA/MA0801.1/Jaspar

Match Rank:9
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CCGVGGTGTTAAT
---AGGTGTGA--
 A G T C A G T C C T A G T C G A A C T G C T A G A C G T A C T G A C G T A G C T C T G A G T C A A C G T
A C G T A C G T A C G T C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A A C G T A C G T

TBX21/MA0690.1/Jaspar

Match Rank:10
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CCGVGGTGTTAAT
--AAGGTGTGAA-
 A G T C A G T C C T A G T C G A A C T G C T A G A C G T A C T G A C G T A G C T C T G A G T C A A C G T
A C G T A C G T C T G A C T G A C T A G A C T G A G C T C A T G G A C T A C T G C T G A G C T A A C G T