Information for 6-CTGACCTGCCTAGTHH (Motif 8)

A G T C C A G T A C T G G T C A A T G C A T G C C G A T A C T G G T A C A T G C A C G T C G T A A T C G A G C T G A C T G A C T
Reverse Opposite:
C G T A C G T A C T G A A T G C A C G T T G C A A T C G A C T G G T A C C G T A A T C G A T C G A C G T A G T C G T C A A C T G
p-value:1e-8
log p-value:-1.974e+01
Information Content per bp:1.711
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.59%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.7 +/- 24.6bp
Average Position of motif in Background48.9 +/- 31.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CTGACCTGCCTAGTHH
-TGACCT---------
 A G T C C A G T A C T G G T C A A T G C A T G C C G A T A C T G G T A C A T G C A C G T C G T A A T C G A G C T G A C T G A C T
A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CTGACCTGCCTAGTHH
-TGACCTYA-------
 A G T C C A G T A C T G G T C A A T G C A T G C C G A T A C T G G T A C A T G C A C G T C G T A A T C G A G C T G A C T G A C T
A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:3
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---CTGACCTGCCTAGTHH
NNNNTGACCCGGCGCG---
 A C G T A C G T A C G T A G T C C A G T A C T G G T C A A T G C A T G C C G A T A C T G G T A C A T G C A C G T C G T A A T C G A G C T G A C T G A C T
C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CTGACCTGCCTAGTHH
CTGACCTTTG------
 A G T C C A G T A C T G G T C A A T G C A T G C C G A T A C T G G T A C A T G C A C G T C G T A A T C G A G C T G A C T G A C T
A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:5
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CTGACCTGCCTAGTHH
GTGACCTT--------
 A G T C C A G T A C T G G T C A A T G C A T G C C G A T A C T G G T A C A T G C A C G T C G T A A T C G A G C T G A C T G A C T
A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZEB1/MA0103.2/Jaspar

Match Rank:6
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CTGACCTGCCTAGTHH
CCTCACCTG--------
 A C G T A G T C C A G T A C T G G T C A A T G C A T G C C G A T A C T G G T A C A T G C A C G T C G T A A T C G A G C T G A C T G A C T
T G A C A G T C C G A T A G T C C G T A A G T C A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:7
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CTGACCTGCCTAGTHH
-TGACCTTGAT-----
 A G T C C A G T A C T G G T C A A T G C A T G C C G A T A C T G G T A C A T G C A C G T C G T A A T C G A G C T G A C T G A C T
A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:8
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:CTGACCTGCCTAGTHH
-TGACCYCT-------
 A G T C C A G T A C T G G T C A A T G C A T G C C G A T A C T G G T A C A T G C A C G T C G T A A T C G A G C T G A C T G A C T
A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---CTGACCTGCCTAGTHH
NNACTTACCTN--------
 A C G T A C G T A C G T A G T C C A G T A C T G G T C A A T G C A T G C C G A T A C T G G T A C A T G C A C G T C G T A A T C G A G C T G A C T G A C T
C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:10
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:CTGACCTGCCTAGTHH
CGGAGC----------
 A G T C C A G T A C T G G T C A A T G C A T G C C G A T A C T G G T A C A T G C A C G T C G T A A T C G A G C T G A C T G A C T
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T