Information for 5-CGGCAGTAATTATGCT (Motif 7)

A T G C C T A G C T A G G T A C C G T A A C T G A G C T C G T A C G T A A G C T A C G T G T C A A G C T A C T G T G A C A C G T
Reverse Opposite:
C G T A A C T G G T A C C T G A A C G T C G T A C T G A C G A T A C G T C T G A A G T C G A C T A C T G A G T C A G T C A T C G
p-value:1e-9
log p-value:-2.136e+01
Information Content per bp:1.763
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.59%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets48.5 +/- 30.5bp
Average Position of motif in Background47.5 +/- 18.8bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0062.1_Hoxb7/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CGGCAGTAATTATGCT
TNNCATTAATTANTNC
 A T G C C T A G C T A G G T A C C G T A A C T G A G C T C G T A C G T A A G C T A C G T G T C A A G C T A C T G T G A C A C G T
A G C T C G A T T A C G G T A C T G C A A C G T G A C T G T C A G C T A C G A T C A G T C T G A T G A C A C G T T C G A T A G C

PH0072.1_Hoxc8/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CGGCAGTAATTATGCT
TTGGGGTAATTAACGT
 A T G C C T A G C T A G G T A C C G T A A C T G A G C T C G T A C G T A A G C T A C G T G T C A A G C T A C T G T G A C A C G T
A C G T G C A T C A T G C T A G C T A G C A T G G A C T G T C A G C T A C A G T C A G T C T G A G T C A A G T C C A T G A C G T

PH0039.1_Mnx1/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CGGCAGTAATTATGCT
NNNCACTAATTANTNN
 A T G C C T A G C T A G G T A C C G T A A C T G A G C T C G T A C G T A A G C T A C G T G T C A A G C T A C T G T G A C A C G T
A T G C C T A G A T G C G A T C T G C A A T G C G A C T G T C A C G T A G A C T A C G T C T G A T A C G A C G T T G C A T G A C

PH0022.1_Dlx3/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CGGCAGTAATTATGCT--
-NNNGGTAATTATNGNGN
 A T G C C T A G C T A G G T A C C G T A A C T G A G C T C G T A C G T A A G C T A C G T G T C A A G C T A C T G T G A C A C G T A C G T A C G T
A C G T C A T G C G A T A T G C C A T G T C A G G A C T G C T A C G T A A C G T C G A T C T G A G A C T G T A C A C T G A G T C C A T G T G C A

PH0023.1_Dlx4/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CGGCAGTAATTATGCT--
-GTCGGTAATTATNGNGN
 A T G C C T A G C T A G G T A C C G T A A C T G A G C T C G T A C G T A A G C T A C G T G T C A A G C T A C T G T G A C A C G T A C G T A C G T
A C G T C A T G C G A T A T G C C A T G A C T G G A C T C G T A C G T A A C G T G C A T C T G A G A C T G T C A A C T G A G T C C A T G T G A C

PH0020.1_Dlx1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CGGCAGTAATTATGCT
CTGAGGTAATTAAT--
 A T G C C T A G C T A G G T A C C G T A A C T G A G C T C G T A C G T A A G C T A C G T G T C A A G C T A C T G T G A C A C G T
A G T C A G C T C T A G T G C A C T A G C T A G G A C T T C G A C G T A C G A T A C G T C T G A C G T A A G C T A C G T A C G T

PH0021.1_Dlx2/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CGGCAGTAATTATGCT
CTGANNTAATTATNNN
 A T G C C T A G C T A G G T A C C G T A A C T G A G C T C G T A C G T A A G C T A C G T G T C A A G C T A C T G T G A C A C G T
T A G C G A C T C A T G C T G A C T A G T A C G G A C T C G T A C G T A C G A T A C G T C T G A G A C T G A C T A G T C A G T C

Nobox/MA0125.1/Jaspar

Match Rank:8
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CGGCAGTAATTATGCT
----ACCAATTA----
 A T G C C T A G C T A G G T A C C G T A A C T G A G C T C G T A C G T A A G C T A C G T G T C A A G C T A C T G T G A C A C G T
A C G T A C G T A C G T A C G T T C G A A T G C G A T C G T C A G T C A A C G T C G A T C T G A A C G T A C G T A C G T A C G T

PH0055.1_Hoxa7_2/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CGGCAGTAATTATGCT--
--GTAGTAATTAATGGAA
 A T G C C T A G C T A G G T A C C G T A A C T G A G C T C G T A C G T A A G C T A C G T G T C A A G C T A C T G T G A C A C G T A C G T A C G T
A C G T A C G T A C T G A C G T T G C A A C T G G C A T G T C A C G T A A C G T C A G T C G T A T G C A A C G T T C A G A T C G G T C A T G C A

PH0061.1_Hoxb6/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CGGCAGTAATTATGCT--
--NNNGTAATTACNNATA
 A T G C C T A G C T A G G T A C C G T A A C T G A G C T C G T A C G T A A G C T A C G T G T C A A G C T A C T G T G A C A C G T A C G T A C G T
A C G T A C G T T C G A G T C A A T C G C A T G A G C T G T C A C G T A C G A T C A G T C T G A T G A C T A G C G T C A G C T A C G A T C G T A