Information for 3-TGTTAATRCARGRYAT (Motif 3)

A C G T A C T G A C G T A C G T T C G A C G T A A C G T C T G A A G T C C T G A C T A G C T A G C T G A A G C T G T C A A C G T
Reverse Opposite:
C G T A A C G T C T G A A G C T A G T C A G T C G A C T A C T G A G C T C G T A G A C T A C G T C G T A G T C A G T A C C G T A
p-value:1e-12
log p-value:-2.973e+01
Information Content per bp:1.739
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif2.39%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.2 +/- 26.0bp
Average Position of motif in Background65.2 +/- 16.5bp
Strand Bias (log2 ratio + to - strand density)3.2
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0122.1_Foxk1_2/Jaspar

Match Rank:1
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---TGTTAATRCARGRYAT
NNNTGTTGTTGTTNG----
 A C G T A C G T A C G T A C G T A C T G A C G T A C G T T C G A C G T A A C G T C T G A A G T C C T G A C T A G C T A G C T G A A G C T G T C A A C G T
C T G A C A T G C T A G G C A T C T A G G C A T A C G T C T A G A G C T A C G T C T A G G A C T C A G T C G A T C A T G A C G T A C G T A C G T A C G T

PB0119.1_Foxa2_2/Jaspar

Match Rank:2
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----TGTTAATRCARGRYAT
NCNTTTGTTATTTNN------
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C G T T C G A C G T A A C G T C T G A A G T C C T G A C T A G C T A G C T G A A G C T G T C A A C G T
A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer

Match Rank:3
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-TGTTAATRCARGRYAT
NTGTTTAYATWW-----
 A C G T A C G T A C T G A C G T A C G T T C G A C G T A A C G T C T G A A G T C C T G A C T A G C T A G C T G A A G C T G T C A A C G T
C A G T A C G T C T A G A C G T A C G T A C G T C G T A A G C T T G C A G A C T C G T A C G T A A C G T A C G T A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-TGTTAATRCARGRYAT
NTTTTATGAC-------
 A C G T A C G T A C T G A C G T A C G T T C G A C G T A A C G T C T G A A G T C C T G A C T A G C T A G C T G A A G C T G T C A A C G T
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Foxj2/MA0614.1/Jaspar

Match Rank:5
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-TGTTAATRCARGRYAT
TTGTTTAC---------
 A C G T A C G T A C T G A C G T A C G T T C G A C G T A A C G T C T G A A G T C C T G A C T A G C T A G C T G A A G C T G T C A A C G T
C G A T A C G T C T A G A C G T C G A T A C G T C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0187.1_Tcf7_2/Jaspar

Match Rank:6
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----TGTTAATRCARGRYAT
NNNTTTNTAATACNG-----
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C G T T C G A C G T A A C G T C T G A A G T C C T G A C T A G C T A G C T G A A G C T G T C A A C G T
C G A T C A G T C T A G C A G T C A G T C G A T T G C A A G C T G T C A C G T A C G A T C G T A G T A C T C A G C A T G A C G T A C G T A C G T A C G T A C G T

FOXL1/MA0033.2/Jaspar

Match Rank:7
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:TGTTAATRCARGRYAT
TGTTTAC---------
 A C G T A C T G A C G T A C G T T C G A C G T A A C G T C T G A A G T C C T G A C T A G C T A G C T G A A G C T G T C A A C G T
C A G T C T A G A C G T C A G T A C G T C T G A G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:8
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-TGTTAATRCARGRYAT
NTTTTATTACN------
 A C G T A C G T A C T G A C G T A C G T T C G A C G T A A C G T C T G A A G T C C T G A C T A G C T A G C T G A A G C T G T C A A C G T
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C A C G T A C G T A C G T A C G T A C G T A C G T

Foxq1/MA0040.1/Jaspar

Match Rank:9
Score:0.49
Offset:-3
Orientation:forward strand
Alignment:---TGTTAATRCARGRYAT
TATTGTTTATT--------
 A C G T A C G T A C G T A C G T A C T G A C G T A C G T T C G A C G T A A C G T C T G A A G T C C T G A C T A G C T A G C T G A A G C T G T C A A C G T
G A C T C T G A G C A T C G A T A C T G A C G T A C G T A C G T C T G A A C G T C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:10
Score:0.48
Offset:1
Orientation:reverse strand
Alignment:TGTTAATRCARGRYAT
-TTTAAT---------
 A C G T A C T G A C G T A C G T T C G A C G T A A C G T C T G A A G T C C T G A C T A G C T A G C T G A A G C T G T C A A C G T
A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T