Information for 12-AGCAGGACAWAAGCAG (Motif 19)

C T G A T C A G G T A C C G T A C A T G T C A G T G C A A T G C C G T A C G A T G T C A G T C A T A C G A G T C G T C A C T A G
Reverse Opposite:
A G T C C A G T A C T G A T G C A C G T A C G T G C T A A C G T T A C G A C G T A G T C G T A C A C G T A C T G A G T C A G C T
p-value:1e-8
log p-value:-1.953e+01
Information Content per bp:1.719
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif12.4
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets54.9 +/- 21.3bp
Average Position of motif in Background59.4 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0121.1_Foxj3_2/Jaspar

Match Rank:1
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---AGCAGGACAWAAGCAG
AACACCAAAACAAAGGA--
 A C G T A C G T A C G T C T G A T C A G G T A C C G T A C A T G T C A G T G C A A T G C C G T A C G A T G T C A G T C A T A C G A G T C G T C A C T A G
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A A C G T A C G T

PB0123.1_Foxl1_2/Jaspar

Match Rank:2
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--AGCAGGACAWAAGCAG
ATATCAAAACAAAACA--
 A C G T A C G T C T G A T C A G G T A C C G T A C A T G T C A G T G C A A T G C C G T A C G A T G T C A G T C A T A C G A G T C G T C A C T A G
G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:3
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AGCAGGACAWAAGCAG
CGAAGCACACAAAATA
 C T G A T C A G G T A C C G T A C A T G T C A G T G C A A T G C C G T A C G A T G T C A G T C A T A C G A G T C G T C A C T A G
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:4
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:AGCAGGACAWAAGCAG
NACAGGAAAT------
 C T G A T C A G G T A C C G T A C A T G T C A G T G C A A T G C C G T A C G A T G T C A G T C A T A C G A G T C G T C A C T A G
T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:5
Score:0.51
Offset:0
Orientation:forward strand
Alignment:AGCAGGACAWAAGCAG
NACAGGAAAT------
 C T G A T C A G G T A C C G T A C A T G T C A G T G C A A T G C C G T A C G A T G T C A G T C A T A C G A G T C G T C A C T A G
T G C A C T G A A G T C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

MF0005.1_Forkhead_class/Jaspar

Match Rank:6
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:AGCAGGACAWAAGCAG
------AAATAAACA-
 C T G A T C A G G T A C C G T A C A T G T C A G T G C A A T G C C G T A C G A T G T C A G T C A T A C G A G T C G T C A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A A C G T

Sox3/MA0514.1/Jaspar

Match Rank:7
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:AGCAGGACAWAAGCAG
---AAAACAAAGG---
 C T G A T C A G G T A C C G T A C A T G T C A G T G C A A T G C C G T A C G A T G T C A G T C A T A C G A G T C G T C A C T A G
A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:8
Score:0.49
Offset:0
Orientation:forward strand
Alignment:AGCAGGACAWAAGCAG
AGCGGCACACACGCAA
 C T G A T C A G G T A C C G T A C A T G T C A G T G C A A T G C C G T A C G A T G T C A G T C A T A C G A G T C G T C A C T A G
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

PB0120.1_Foxj1_2/Jaspar

Match Rank:9
Score:0.49
Offset:-2
Orientation:forward strand
Alignment:--AGCAGGACAWAAGCAG
ATGTCACAACAACAC---
 A C G T A C G T C T G A T C A G G T A C C G T A C A T G T C A G T G C A A T G C C G T A C G A T G T C A G T C A T A C G A G T C G T C A C T A G
C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:10
Score:0.48
Offset:-6
Orientation:forward strand
Alignment:------AGCAGGACAWAAGCAG
CCACACAGCAGGAGA-------
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A T C A G G T A C C G T A C A T G T C A G T G C A A T G C C G T A C G A T G T C A G T C A T A C G A G T C G T C A C T A G
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T