Information for 5-CTTTATTCTCTACCCA (Motif 6)

A G T C A C G T A C G T A C G T C G T A A G C T A G C T A G T C A G C T G T A C C G A T C G T A A T G C A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G A T C G A C G T C G T A A C T G C T G A A C T G C T G A C T G A G C A T C G T A C G T A G T C A A C T G
p-value:1e-10
log p-value:-2.434e+01
Information Content per bp:1.857
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.63%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.5 +/- 27.9bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:1
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTTTATTCTCTACCCA
YCTTTGTTCC-------
 A C G T A G T C A C G T A C G T A C G T C G T A A G C T A G C T A G T C A G C T G T A C C G A T C G T A A T G C A G T C A G T C C G T A
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:2
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CTTTATTCTCTACCCA
CCTTTGTTTT-------
 A C G T A G T C A C G T A C G T A C G T C G T A A G C T A G C T A G T C A G C T G T A C C G A T C G T A A T G C A G T C A G T C C G T A
A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:3
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----CTTTATTCTCTACCCA
TNNTCCTTTGTTCTNNT----
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C G T C G T A A G C T A G C T A G T C A G C T G T A C C G A T C G T A A T G C A G T C A G T C C G T A
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T A C G T A C G T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:4
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----CTTTATTCTCTACCCA
NNNTCCTTTGTTCTNNN----
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C G T C G T A A G C T A G C T A G T C A G C T G T A C C G A T C G T A A T G C A G T C A G T C C G T A
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:5
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CTTTATTCTCTACCCA
CCWTTGTYYB-------
 A C G T A G T C A C G T A C G T A C G T C G T A A G C T A G C T A G T C A G C T G T A C C G A T C G T A A T G C A G T C A G T C C G T A
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:6
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CTTTATTCTCTACCCA
CCATTGTTTT-------
 A C G T A G T C A C G T A C G T A C G T C G T A A G C T A G C T A G T C A G C T G T A C C G A T C G T A A T G C A G T C A G T C C G T A
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0182.1_Srf_2/Jaspar

Match Rank:7
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---CTTTATTCTCTACCCA
NNNNTTTTTTTTTNAAC--
 A C G T A C G T A C G T A G T C A C G T A C G T A C G T C G T A A G C T A G C T A G T C A G C T G T A C C G A T C G T A A T G C A G T C A G T C C G T A
C G A T C G T A T C G A A C G T C A G T C A G T C A G T C G A T A C G T A C G T A C G T G A C T G A C T G C A T G C T A T G C A A T G C A C G T A C G T

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:8
Score:0.49
Offset:-5
Orientation:forward strand
Alignment:-----CTTTATTCTCTACCCA
ATTTCCTTTGATCTATA----
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C G T C G T A A G C T A G C T A G T C A G C T G T A C C G A T C G T A A T G C A G T C A G T C C G T A
C G T A C G A T C A G T A G C T A G T C A G T C G A C T G A C T C G A T A C T G C G T A C G A T T A G C G C A T C G T A C A G T T G C A A C G T A C G T A C G T A C G T

PB0082.1_Tcf3_1/Jaspar

Match Rank:9
Score:0.49
Offset:-5
Orientation:reverse strand
Alignment:-----CTTTATTCTCTACCCA
NNTTCCTTTGATCTANA----
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C G T C G T A A G C T A G C T A G T C A G C T G T A C C G A T C G T A A T G C A G T C A G T C C G T A
C G A T C G A T C G A T A G C T A G T C A G T C G C A T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T C T G A A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-CTTTATTCTCTACCCA
CCWTTGTY---------
 A C G T A G T C A C G T A C G T A C G T C G T A A G C T A G C T A G T C A G C T G T A C C G A T C G T A A T G C A G T C A G T C C G T A
A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T