Information for 5-CCACACTGTTCATGGC (Motif 13)

A G T C A G T C C G T A A G T C C G T A A G T C A C G T A C T G C G A T C G A T A T G C C G T A A C G T A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C C G T A A C G T T A C G C G T A C G T A T A G C C G T A A C T G A C G T A C T G C G A T A C T G A C T G
p-value:1e-10
log p-value:-2.507e+01
Information Content per bp:1.917
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets63.8 +/- 18.8bp
Average Position of motif in Background87.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:CCACACTGTTCATGGC-
-------GTTAATGGCC
 A G T C A G T C C G T A A G T C C G T A A G T C A C G T A C T G C G A T C G A T A T G C C G T A A C G T A C T G A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

GLI2/MA0734.1/Jaspar

Match Rank:2
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CCACACTGTTCATGGC
GCGACCACACTG--------
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A G T C C G T A A G T C A C G T A C T G C G A T C G A T A T G C C G T A A C G T A C T G A C T G A G T C
C T A G T G A C C A T G T G C A A G T C A T G C G T C A A T G C T G C A G T A C C G A T C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SOX8/MA0868.1/Jaspar

Match Rank:3
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CCACACTGTTCATGGC-
-AACACTGCACATTGTT
 A G T C A G T C C G T A A G T C C G T A A G T C A C G T A C T G C G A T C G A T A T G C C G T A A C G T A C T G A C T G A G T C A C G T
A C G T C T G A C G T A A G T C G T C A G T A C A C G T T A C G T G A C C G T A G A T C G T C A A C G T A G C T A C T G A C G T C G A T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:CCACACTGTTCATGGC
-----CTGTTCCTGG-
 A G T C A G T C C G T A A G T C C G T A A G T C A C G T A C T G C G A T C G A T A T G C C G T A A C G T A C T G A C T G A G T C
A C G T A C G T A C G T A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:5
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----CCACACTGTTCATGGC
NWAACCACADNN--------
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A G T C C G T A A G T C A C G T A C T G C G A T C G A T A T G C C G T A A C G T A C T G A C T G A G T C
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

YY2/MA0748.1/Jaspar

Match Rank:6
Score:0.52
Offset:9
Orientation:reverse strand
Alignment:CCACACTGTTCATGGC----
---------TAATGGCGGNC
 A G T C A G T C C G T A A G T C C G T A A G T C A C G T A C T G C G A T C G A T A T G C C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

PH0063.1_Hoxb8/Jaspar

Match Rank:7
Score:0.49
Offset:4
Orientation:reverse strand
Alignment:CCACACTGTTCATGGC----
----TTTATTAATTGCNNGN
 A G T C A G T C C G T A A G T C C G T A A G T C A C G T A C T G C G A T C G A T A T G C C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T G A C T A C G T C T G A C G A T G C A T C G T A C G T A A C G T C A G T C T A G G A T C G T A C T C A G A T C G C G A T

ZNF354C/MA0130.1/Jaspar

Match Rank:8
Score:0.49
Offset:-2
Orientation:forward strand
Alignment:--CCACACTGTTCATGGC
ATCCAC------------
 A C G T A C G T A G T C A G T C C G T A A G T C C G T A A G T C A C G T A C T G C G A T C G A T A T G C C G T A A C G T A C T G A C T G A G T C
T G C A G C A T A G T C A G T C C G T A A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:9
Score:0.48
Offset:-2
Orientation:reverse strand
Alignment:--CCACACTGTTCATGGC
GGCCACACCCAN------
 A C G T A C G T A G T C A G T C C G T A A G T C C G T A A G T C A C G T A C T G C G A T C G A T A T G C C G T A A C G T A C T G A C T G A G T C
C T A G C T A G T G A C A G T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T

MF0008.1_MADS_class/Jaspar

Match Rank:10
Score:0.48
Offset:5
Orientation:forward strand
Alignment:CCACACTGTTCATGGC
-----CCATATATGG-
 A G T C A G T C C G T A A G T C C G T A A G T C A C G T A C T G C G A T C G A T A T G C C G T A A C G T A C T G A C T G A G T C
A C G T A C G T A C G T A C G T A C G T G A T C A G T C G C T A C G A T C G T A C G A T C G T A G C A T C T A G C A T G A C G T