Information for 1-GRGGTCANHGRGTTCA (Motif 1)

T C A G C T G A C T A G A C T G A G C T A G T C C T G A A G T C G C T A C T A G C T A G A C T G A C G T C A G T A G T C T C G A
Reverse Opposite:
A G C T T C A G G T C A G T C A A G T C A G T C A G T C C G A T T C A G A G C T T A C G T C G A G T A C A G T C A G C T A G T C
p-value:1e-107
log p-value:-2.466e+02
Information Content per bp:1.663
Number of Target Sequences with motif58.0
Percentage of Target Sequences with motif6.95%
Number of Background Sequences with motif19.8
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets47.0 +/- 20.9bp
Average Position of motif in Background40.4 +/- 22.4bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:1
Score:0.98
Offset:-1
Orientation:forward strand
Alignment:-GRGGTCANHGRGTTCA---
NGAGGTCANNGAGTTCANNN
 A C G T T C A G C T G A C T A G A C T G A G C T A G T C C T G A A G T C G C T A C T A G C T A G A C T G A C G T C A G T A G T C T C G A A C G T A C G T A C G T
C T G A T C A G C T G A C T A G C A T G A C G T A T G C C G T A A T G C G C A T T C A G C T G A A C T G A C G T C A G T A G T C C G T A C A G T C T A G C A T G

RXRA::VDR/MA0074.1/Jaspar

Match Rank:2
Score:0.93
Offset:1
Orientation:forward strand
Alignment:GRGGTCANHGRGTTCA
-GGGTCAACGAGTTCA
 T C A G C T G A C T A G A C T G A G C T A G T C C T G A A G T C G C T A C T A G C T A G A C T G A C G T C A G T A G T C T C G A
A C G T C T A G A C T G A C T G A C G T A G T C C T G A G C A T A G T C C T A G C T A G A C T G A C G T C G A T A G T C T C G A

Vdr/MA0693.1/Jaspar

Match Rank:3
Score:0.89
Offset:0
Orientation:forward strand
Alignment:GRGGTCANHGRGTTCA
GAGTTCATTGAGTTCA
 T C A G C T G A C T A G A C T G A G C T A G T C C T G A A G T C G C T A C T A G C T A G A C T G A C G T C A G T A G T C T C G A
T C A G T C G A C A T G A C G T A C G T A G T C C T G A G A C T G A C T T C A G T C G A C T A G A C G T A C G T A G T C C T G A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:4
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GRGGTCANHGRGTTCA
AGRGGTCA---------
 A C G T T C A G C T G A C T A G A C T G A G C T A G T C C T G A A G T C G C T A C T A G C T A G A C T G A C G T C A G T A G T C T C G A
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:5
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GRGGTCANHGRGTTCA
CAAAGGTCAAGGG-----
 A C G T A C G T T C A G C T G A C T A G A C T G A G C T A G T C C T G A A G T C G C T A C T A G C T A G A C T G A C G T C A G T A G T C T C G A
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G A C G T A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GRGGTCANHGRGTTCA
-AGGTCA---------
 T C A G C T G A C T A G A C T G A G C T A G T C C T G A A G T C G C T A C T A G C T A G A C T G A C G T C A G T A G T C T C G A
A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GRGGTCANHGRGTTCA
TRAGGTCA---------
 A C G T T C A G C T G A C T A G A C T G A G C T A G T C C T G A A G T C G C T A C T A G C T A G A C T G A C G T C A G T A G T C T C G A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0057.1_Rxra_1/Jaspar

Match Rank:8
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----GRGGTCANHGRGTTCA
NTNNNGGGGTCANGNNN----
 A C G T A C G T A C G T A C G T A C G T T C A G C T G A C T A G A C T G A G C T A G T C C T G A A G T C G C T A C T A G C T A G A C T G A C G T C A G T A G T C T C G A
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A A C G T A C G T A C G T A C G T

ESR2/MA0258.2/Jaspar

Match Rank:9
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GRGGTCANHGRGTTCA
-AGGTCACCCTGACCT
 T C A G C T G A C T A G A C T G A G C T A G T C C T G A A G T C G C T A C T A G C T A G A C T G A C G T C A G T A G T C T C G A
A C G T C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

RORA/MA0071.1/Jaspar

Match Rank:10
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GRGGTCANHGRGTTCA
ATCAAGGTCA---------
 A C G T A C G T A C G T T C A G C T G A C T A G A C T G A G C T A G T C C T G A A G T C G C T A C T A G C T A G A C T G A C G T C A G T A G T C T C G A
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T