Information for 4-TTGCCCTTAA (Motif 3)

G A C T A C G T C A T G G T A C A T G C G T A C A G C T G A C T T G C A C T G A
Reverse Opposite:
G A C T A C G T C T G A T C G A C A T G A T C G C A T G G T A C T G C A C T G A
p-value:1e-16
log p-value:-3.749e+01
Information Content per bp:1.673
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif8.41%
Number of Background Sequences with motif613.3
Percentage of Background Sequences with motif1.38%
Average Position of motif in Targets50.6 +/- 23.9bp
Average Position of motif in Background48.6 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.82
Offset:0
Orientation:forward strand
Alignment:TTGCCCTTAA
CTGCCCGCA-
 G A C T A C G T C A T G G T A C A T G C G T A C A G C T G A C T T G C A C T G A
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:TTGCCCTTAA
-TGACCTYA-
 G A C T A C G T C A T G G T A C A T G C G T A C A G C T G A C T T G C A C T G A
A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:3
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----TTGCCCTTAA--
GGGTGTGCCCAAAAGG
 A C G T A C G T A C G T A C G T G A C T A C G T C A T G G T A C A T G C G T A C A G C T G A C T T G C A C T G A A C G T A C G T
C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

Esrrg/MA0643.1/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TTGCCCTTAA
ATGACCTTGA
 G A C T A C G T C A T G G T A C A T G C G T A C A G C T G A C T T G C A C T G A
C G T A G A C T T C A G G T C A T A G C G T A C A G C T G A C T A T C G C T G A

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TTGCCCTTAA
NTGACCTTGA
 G A C T A C G T C A T G G T A C A T G C G T A C A G C T G A C T T G C A C T G A
C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A

NR4A2/MA0160.1/Jaspar

Match Rank:6
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TTGCCCTTAA
GTGACCTT--
 G A C T A C G T C A T G G T A C A T G C G T A C A G C T G A C T T G C A C T G A
A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:7
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TTGCCCTTAA-
-TGACCTTGAV
 G A C T A C G T C A T G G T A C A T G C G T A C A G C T G A C T T G C A C T G A A C G T
A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A

ESRRB/MA0141.3/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TTGCCCTTAA
NATGACCTTGA
 A C G T G A C T A C G T C A T G G T A C A T G C G T A C A G C T G A C T T G C A C T G A
C G A T C G T A G A C T C T A G T C G A T A G C A G T C A G C T C G A T A T C G C T G A

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:9
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TTGCCCTTAA
BNTGDCCTTG-
 A C G T G A C T A C G T C A T G G T A C A T G C G T A C A G C T G A C T T G C A C T G A
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T

RORA/MA0071.1/Jaspar

Match Rank:10
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TTGCCCTTAA-
-TGACCTTGAT
 G A C T A C G T C A T G G T A C A T G C G T A C A G C T G A C T T G C A C T G A A C G T
A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T