Information for 17-GCAGACGCCAVAC (Motif 21)

A C T G T A G C C G T A A C T G G T C A T G A C A C T G A G T C A G T C C T G A T A G C C T G A A G T C
Reverse Opposite:
A C T G G A C T A T C G G A C T A C T G C T A G A G T C A C T G A C G T A G T C C G A T A C T G G T A C
p-value:1e-6
log p-value:-1.502e+01
Information Content per bp:1.727
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif2.88%
Number of Background Sequences with motif186.8
Percentage of Background Sequences with motif0.42%
Average Position of motif in Targets47.5 +/- 27.9bp
Average Position of motif in Background50.4 +/- 36.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GCAGACGCCAVAC
CCAGACRSVB---
 A C T G T A G C C G T A A C T G G T C A T G A C A C T G A G T C A G T C C T G A T A G C C T G A A G T C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GCAGACGCCAVAC
CCAGACAG-----
 A C T G T A G C C G T A A C T G G T C A T G A C A C T G A G T C A G T C C T G A T A G C C T G A A G T C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T

HINFP/MA0131.2/Jaspar

Match Rank:3
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GCAGACGCCAVAC
NCGCGGACGTTG---
 A C G T A C G T A C T G T A G C C G T A A C T G G T C A T G A C A C T G A G T C A G T C C T G A T A G C C T G A A G T C
T G A C G T A C T A C G T A G C C T A G A T C G C G T A T A G C T A C G A G C T A C G T T A C G A C G T A C G T A C G T

NRF1/MA0506.1/Jaspar

Match Rank:4
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---GCAGACGCCAVAC
TGCGCAGGCGC-----
 A C G T A C G T A C G T A C T G T A G C C G T A A C T G G T C A T G A C A C T G A G T C A G T C C T G A T A G C C T G A A G T C
A G C T A C T G A T G C C T A G A G T C T G C A A C T G T A C G A G T C A C T G A G T C A C G T A C G T A C G T A C G T A C G T

CREB1/MA0018.2/Jaspar

Match Rank:5
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GCAGACGCCAVAC
--TGACGTCA---
 A C T G T A G C C G T A A C T G G T C A T G A C A C T G A G T C A G T C C T G A T A G C C T G A A G T C
A C G T A C G T A C G T A T C G C G T A A T G C C T A G A G C T G T A C C G T A A C G T A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:6
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----GCAGACGCCAVAC
NNNNAGCAGCTGCTGAN-
 A C G T A C G T A C G T A C G T A C G T A C T G T A G C C G T A A C T G G T C A T G A C A C T G A G T C A G T C C T G A T A G C C T G A A G T C
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G A C G T

MTF1/MA0863.1/Jaspar

Match Rank:7
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GCAGACGCCAVAC
TTTGCACACGGCAC--
 A C G T A C G T A C G T A C T G T A G C C G T A A C T G G T C A T G A C A C T G A G T C A G T C C T G A T A G C C T G A A G T C
C A G T A C G T G A C T T C A G G T A C C G T A T A G C G T C A A G T C C A T G C A T G A G T C T G C A G A T C A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GCAGACGCCAVAC
CGCAGCTGCG----
 A C G T A C T G T A G C C G T A A C T G G T C A T G A C A C T G A G T C A G T C C T G A T A G C C T G A A G T C
T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T A C G T A C G T A C G T

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:9
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GCAGACGCCAVAC
NNVVCAGCTGBN----
 A C G T A C G T A C G T A C T G T A G C C G T A A C T G G T C A T G A C A C T G A G T C A G T C C T G A T A G C C T G A A G T C
C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T A C G T A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GCAGACGCCAVAC
SDGCAGGTGCNS---
 A C G T A C G T A C T G T A G C C G T A A C T G G T C A T G A C A C T G A G T C A G T C C T G A T A G C C T G A A G T C
A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C A C G T A C G T A C G T