Information for 13-AAAGGATTGT (Motif 20)

C G T A C T G A G T C A A C T G T A C G G C T A A C G T G C A T A C T G A C G T
Reverse Opposite:
T G C A A G T C C G T A C G T A C G A T A T G C T A G C A C G T A G C T G C A T
p-value:1e-6
log p-value:-1.581e+01
Information Content per bp:1.701
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.0 +/- 22.5bp
Average Position of motif in Background38.3 +/- 5.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0175.1_Sox4_2/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AAAGGATTGT------
GGAAAAATTGTTAGGAA
 A C G T C G T A C T G A G T C A A C T G T A C G G C T A A C G T G C A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A

MF0011.1_HMG_class/Jaspar

Match Rank:2
Score:0.66
Offset:5
Orientation:forward strand
Alignment:AAAGGATTGT-
-----ATTGTT
 C G T A C T G A G T C A A C T G T A C G G C T A A C G T G C A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A A C G T G A C T C T A G G C A T A G C T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:3
Score:0.66
Offset:3
Orientation:forward strand
Alignment:AAAGGATTGT---
---CCATTGTTNY
 C G T A C T G A G T C A A C T G T A C G G C T A A C G T G C A T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

SRY/MA0084.1/Jaspar

Match Rank:4
Score:0.66
Offset:5
Orientation:reverse strand
Alignment:AAAGGATTGT----
-----ATTGTTTAN
 C G T A C T G A G T C A A C T G T A C G G C T A A C G T G C A T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A A G C T A C G T C T A G C G A T C G A T G C A T G C T A G T A C

Sox5/MA0087.1/Jaspar

Match Rank:5
Score:0.64
Offset:5
Orientation:forward strand
Alignment:AAAGGATTGT--
-----ATTGTTA
 C G T A C T G A G T C A A C T G T A C G G C T A A C G T G C A T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T

PB0165.1_Sox11_2/Jaspar

Match Rank:6
Score:0.64
Offset:2
Orientation:forward strand
Alignment:AAAGGATTGT------
--AAAATTGTTATGAA
 C G T A C T G A G T C A A C T G T A C G G C T A A C G T G C A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C T G A C T G A C T G A A C G T G A C T T C A G C G A T G A C T G C T A C A G T T C A G C T G A C G T A

PB0063.1_Sox13_1/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:AAAGGATTGT------
AANTTATTGTTCTNNA
 C G T A C T G A G T C A A C T G T A C G G C T A A C G T G C A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G T A C G T A G C A T G C A T G C A T C G T A A G C T C G A T C T A G C G A T G A C T G T A C A G C T G C A T C T G A G C T A

Sox17/MA0078.1/Jaspar

Match Rank:8
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AAAGGATTGT-
--CTCATTGTC
 C G T A C T G A G T C A A C T G T A C G G C T A A C G T G C A T A C T G A C G T A C G T
A C G T A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:9
Score:0.60
Offset:3
Orientation:forward strand
Alignment:AAAGGATTGT---
---CCWTTGTYYB
 C G T A C T G A G T C A A C T G T A C G G C T A A C G T G C A T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

PB0067.1_Sox18_1/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AAAGGATTGT-------
-TTCAATTGTTCTAAAA
 C G T A C T G A G T C A A C T G T A C G G C T A A C G T G C A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G C T G C A T A G T C G T C A C G T A C G A T C G A T T C A G C G A T G C A T A G T C G C A T G T C A C G T A G T C A G C T A