Information for 8-GGGCCAGCCAGGATCC (Motif 23)

A T C G A C T G A C T G A G T C A G T C C T G A C T A G A G T C A T G C G C T A A C T G A T C G G C T A A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A C G A T A T G C A G T C C A G T A T C G A C T G A G T C A G C T A C T G A C T G A G T C A G T C A T G C
p-value:1e-7
log p-value:-1.691e+01
Information Content per bp:1.908
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif10.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets45.3 +/- 25.6bp
Average Position of motif in Background52.5 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:1
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GGGCCAGCCAGGATCC
GGACCACCCACG----
 A T C G A C T G A C T G A G T C A G T C C T G A C T A G A G T C A T G C G C T A A C T G A T C G G C T A A C G T A G T C A G T C
C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G A C G T A C G T A C G T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:2
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GGGCCAGCCAGGATCC-
TGGACCAATCAGCACTCT
 A C G T A T C G A C T G A C T G A G T C A G T C C T G A C T A G A G T C A T G C G C T A A C T G A T C G G C T A A C G T A G T C A G T C A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--GGGCCAGCCAGGATCC
AGGTGNCAGACAG-----
 A C G T A C G T A T C G A C T G A C T G A G T C A G T C C T G A C T A G A G T C A T G C G C T A A C T G A T C G G C T A A C G T A G T C A G T C
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T A C G T A C G T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:4
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:GGGCCAGCCAGGATCC
------ANCAGGATGT
 A T C G A C T G A C T G A G T C A G T C C T G A C T A G A G T C A T G C G C T A A C T G A T C G G C T A A C G T A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T

PB0029.1_Hic1_1/Jaspar

Match Rank:5
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---GGGCCAGCCAGGATCC
ACTATGCCAACCTACC---
 A C G T A C G T A C G T A T C G A C T G A C T G A G T C A G T C C T G A C T A G A G T C A T G C G C T A A C T G A T C G G C T A A C G T A G T C A G T C
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.50
Offset:0
Orientation:forward strand
Alignment:GGGCCAGCCAGGATCC
ATGCCAACC-------
 A T C G A C T G A C T G A G T C A G T C C T G A C T A G A G T C A T G C G C T A A C T G A T C G G C T A A C G T A G T C A G T C
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:GGGCCAGCCAGGATCC
---CCAGACAG-----
 A T C G A C T G A C T G A G T C A G T C C T G A C T A G A G T C A T G C G C T A A C T G A T C G G C T A A C G T A G T C A G T C
A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:8
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----GGGCCAGCCAGGATCC
AAATGGACCAATCAG-----
 A C G T A C G T A C G T A C G T A T C G A C T G A C T G A G T C A G T C C T G A C T A G A G T C A T G C G C T A A C T G A T C G G C T A A C G T A G T C A G T C
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-GGGCCAGCCAGGATCC
CGTGCCAAG--------
 A C G T A T C G A C T G A C T G A G T C A G T C C T G A C T A G A G T C A T G C G C T A A C T G A T C G G C T A A C G T A G T C A G T C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.49
Offset:-2
Orientation:forward strand
Alignment:--GGGCCAGCCAGGATCC
AGGTGHCAGACA------
 A C G T A C G T A T C G A C T G A C T G A G T C A G T C C T G A C T A G A G T C A T G C G C T A A C T G A T C G G C T A A C G T A G T C A G T C
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T