Information for 1-TGCCCTCTRGTGG (Motif 2)

A G C T A C T G T G A C A G T C G T A C G A C T A T G C C G A T C T G A T A C G A C G T A C T G A T C G
Reverse Opposite:
T A G C T G A C T G C A A T G C G A C T G C T A T A C G C T G A C A T G T C A G A C T G T A G C T C G A
p-value:1e-19
log p-value:-4.602e+01
Information Content per bp:1.656
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif3.40%
Number of Background Sequences with motif167.3
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets54.3 +/- 28.3bp
Average Position of motif in Background49.4 +/- 24.7bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.86
Offset:-4
Orientation:forward strand
Alignment:----TGCCCTCTRGTGG---
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A G C T A C T G T G A C A G T C G T A C G A C T A T G C C G A T C T G A T A C G A C G T A C T G A T C G A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.85
Offset:-6
Orientation:forward strand
Alignment:------TGCCCTCTRGTGG-
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C T G T G A C A G T C G T A C G A C T A T G C C G A T C T G A T A C G A C G T A C T G A T C G A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF/MA0139.1/Jaspar

Match Rank:3
Score:0.84
Offset:-3
Orientation:reverse strand
Alignment:---TGCCCTCTRGTGG---
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A G C T A C T G T G A C A G T C G T A C G A C T A T G C C G A T C T G A T A C G A C G T A C T G A T C G A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TGCCCTCTRGTGG
NTGCCCANNGGTNA
 A C G T A G C T A C T G T G A C A G T C G T A C G A C T A T G C C G A T C T G A T A C G A C G T A C T G A T C G
T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:5
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TGCCCTCTRGTGG
TGACCYCT-----
 A G C T A C T G T G A C A G T C G T A C G A C T A T G C C G A T C T G A T A C G A C G T A C T G A T C G
A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TGCCCTCTRGTGG
ATGCCCACC-----
 A C G T A G C T A C T G T G A C A G T C G T A C G A C T A T G C C G A T C T G A T A C G A C G T A C T G A T C G
T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TGCCCTCTRGTGG
CTGACCTTTG----
 A C G T A G C T A C T G T G A C A G T C G T A C G A C T A T G C C G A T C T G A T A C G A C G T A C T G A T C G
A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGCCCTCTRGTGG
TGACCTYA-----
 A G C T A C T G T G A C A G T C G T A C G A C T A T G C C G A T C T G A T A C G A C G T A C T G A T C G
A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:9
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----TGCCCTCTRGTGG
NNNNTTGACCCCTNNNN-
 A C G T A C G T A C G T A C G T A C G T A G C T A C T G T G A C A G T C G T A C G A C T A T G C C G A T C T G A T A C G A C G T A C T G A T C G
C A T G T A G C T A G C G A T C C G A T A G C T T C A G G C T A G T A C G A T C A G T C A G T C C G A T T G A C T A C G G T A C A T G C A C G T

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TGCCCTCTRGTGG
CTGCCCGCA-----
 A C G T A G C T A C T G T G A C A G T C G T A C G A C T A T G C C G A T C T G A T A C G A C G T A C T G A T C G
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T A C G T A C G T