Information for 8-CACGTGAGCT (Motif 12)

G A T C C G T A A G T C A C T G A C G T A C T G C G T A A C T G A G T C A C G T
Reverse Opposite:
C G T A A C T G A G T C A C G T G T A C C G T A A G T C A C T G A C G T C A T G
p-value:1e-10
log p-value:-2.461e+01
Information Content per bp:1.926
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif5.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets65.8 +/- 29.2bp
Average Position of motif in Background41.0 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Id2/MA0617.1/Jaspar

Match Rank:1
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-CACGTGAGCT
GCACGTGA---
 A C G T G A T C C G T A A G T C A C T G A C G T A C T G C G T A A C T G A G T C A C G T
T C A G A G T C C G T A A G T C A C T G A C G T A C T G C T G A A C G T A C G T A C G T

Arntl/MA0603.1/Jaspar

Match Rank:2
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-CACGTGAGCT
NCACGTGACN-
 A C G T G A T C C G T A A G T C A C T G A C G T A C T G C G T A A C T G A G T C A C G T
C T A G G T A C C T G A A G T C T C A G C G A T A C T G G T C A A G T C G T A C A C G T

USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-CACGTGAGCT
TCACGTGACC-
 A C G T G A T C C G T A A G T C A C T G A C G T A C T G C G T A A C T G A G T C A C G T
A G C T A G T C G T C A A G T C C T A G A C G T A T C G T C G A A G T C A T G C A C G T

PB0007.1_Bhlhb2_1/Jaspar

Match Rank:4
Score:0.75
Offset:-8
Orientation:forward strand
Alignment:--------CACGTGAGCT----
GGAAGAGTCACGTGACCAATAC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C C G T A A G T C A C T G A C G T A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T
C T A G C T A G G C T A C G T A A C T G C T G A C T A G C A G T G T A C C T G A A G T C T C A G G A C T A C T G G T C A A T G C A G T C G T C A T C G A G A C T C G T A G A T C

Arnt/MA0004.1/Jaspar

Match Rank:5
Score:0.74
Offset:0
Orientation:forward strand
Alignment:CACGTGAGCT
CACGTG----
 G A T C C G T A A G T C A C T G A C G T A C T G C G T A A C T G A G T C A C G T
G T A C C T G A A G T C A C T G A C G T A C T G A C G T A C G T A C G T A C G T

BHLHE40/MA0464.2/Jaspar

Match Rank:6
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--CACGTGAGCT
GTCACGTGAN--
 A C G T A C G T G A T C C G T A A G T C A C T G A C G T A C T G C G T A A C T G A G T C A C G T
C T A G C A G T T G A C C T G A A G T C C T A G A C G T C A T G G T C A A C G T A C G T A C G T

bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-CACGTGAGCT
KCACGTGMCN-
 A C G T G A T C C G T A A G T C A C T G A C G T A C T G C G T A A C T G A G T C A C G T
C A T G G T A C C G T A A G T C C T A G A C G T A C T G G T A C A G T C A G C T A C G T

NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer

Match Rank:8
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--CACGTGAGCT
NVCACGTG----
 A C G T A C G T G A T C C G T A A G T C A C T G A C G T A C T G C G T A A C T G A G T C A C G T
C G A T T G C A G T A C C G T A A G T C C T A G G A C T C A T G A C G T A C G T A C G T A C G T

USF1/MA0093.2/Jaspar

Match Rank:9
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--CACGTGAGCT
GCCACGTGACC-
 A C G T A C G T G A T C C G T A A G T C A C T G A C G T A C T G C G T A A C T G A G T C A C G T
T C A G A G T C G T A C C G T A A G T C T C A G A C G T A C T G C T G A A G T C G A T C A C G T

BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:10
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--CACGTGAGCT
GNCACGTG----
 A C G T A C G T G A T C C G T A A G T C A C T G A C G T A C T G C G T A A C T G A G T C A C G T
C T A G C A G T T G A C C G T A G A T C T C A G G A C T C A T G A C G T A C G T A C G T A C G T