Information for 5-CAAAGAAATATTCAAA (Motif 7)

G A T C C G T A C G T A C G T A A C T G C G T A C G T A C G T A C G A T C G T A A C G T C G A T G T A C C G T A C G T A G T C A
Reverse Opposite:
A C G T C G A T A C G T A C T G G C T A C G T A A C G T C G T A G C A T A C G T C G A T A G T C A C G T A C G T A C G T C A T G
p-value:1e-11
log p-value:-2.659e+01
Information Content per bp:1.807
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.5 +/- 26.4bp
Average Position of motif in Background58.8 +/- 3.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CAAAGAAATATTCAAA
TCATGAATWATTCAT-
 G A T C C G T A C G T A C G T A A C T G C G T A C G T A C G T A C G A T C G T A A C G T C G A T G T A C C G T A C G T A G T C A
G A C T G A T C G C T A C G A T C T A G G T C A C G T A C G A T G C A T C G T A G C A T C A G T A G T C G T C A C A G T A C G T

Foxd3/MA0041.1/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CAAAGAAATATTCAAA
-AAACAAACATTC---
 G A T C C G T A C G T A C G T A A C T G C G T A C G T A C G T A C G A T C G T A A C G T C G A T G T A C C G T A C G T A G T C A
A C G T C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C A C G T A C G T A C G T

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:3
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CAAAGAAATATTCAAA-
--ATGCATWATGCATRW
 G A T C C G T A C G T A C G T A A C T G C G T A C G T A C G T A C G A T C G T A A C G T C G A T G T A C C G T A C G T A G T C A A C G T
A C G T A C G T C G T A A C G T A C T G G T A C C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T C T G A G C A T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:4
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CAAAGAAATATTCAAA
--ATGCATAATTCA--
 G A T C C G T A C G T A C G T A A C T G C G T A C G T A C G T A C G A T C G T A A C G T C G A T G T A C C G T A C G T A G T C A
A C G T A C G T G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A A C G T A C G T

POU2F1/MA0785.1/Jaspar

Match Rank:5
Score:0.60
Offset:6
Orientation:forward strand
Alignment:CAAAGAAATATTCAAA--
------AATATGCAAATT
 G A T C C G T A C G T A C G T A A C T G C G T A C G T A C G T A C G A T C G T A A C G T C G A T G T A C C G T A C G T A G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T

POU4F1/MA0790.1/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CAAAGAAATATTCAAA
-CATTAATTATTCAT-
 G A T C C G T A C G T A C G T A A C T G C G T A C G T A C G T A C G A T C G T A A C G T C G A T G T A C C G T A C G T A G T C A
A C G T G T A C C T G A A G C T G C A T G C T A G C T A G C A T G C A T C G T A C G A T C A G T G A T C C T G A A G C T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:CAAAGAAATATTCAAA
-----GAATATTCAT-
 G A T C C G T A C G T A C G T A A C T G C G T A C G T A C G T A C G A T C G T A A C G T C G A T G T A C C G T A C G T A G T C A
A C G T A C G T A C G T A C G T A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T

POU4F3/MA0791.1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CAAAGAAATATTCAAA
CTCATTAATTATGCAT-
 A C G T G A T C C G T A C G T A C G T A A C T G C G T A C G T A C G T A C G A T C G T A A C G T C G A T G T A C C G T A C G T A G T C A
A G T C C A G T G T A C C T G A G A C T G C A T G C T A G C T A G C A T G C A T G C T A C G A T C A T G G A T C T C G A G A C T A C G T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.58
Offset:7
Orientation:forward strand
Alignment:CAAAGAAATATTCAAA-
-------ATATGCAAAT
 G A T C C G T A C G T A C G T A A C T G C G T A C G T A C G T A C G A T C G T A A C G T C G A T G T A C C G T A C G T A G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T

PB0074.1_Sox8_1/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CAAAGAAATATTCAAA-
TNNAGAACAATANATNN
 G A T C C G T A C G T A C G T A A C T G C G T A C G T A C G T A C G A T C G T A A C G T C G A T G T A C C G T A C G T A G T C A A C G T
G C A T G C T A G T C A C G T A C A T G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C A T G T C A G T A C