Information for 20-CTGTGACCTGCAT (Motif 40)

A T G C A G C T A T C G A C G T A C T G C G T A A G T C A G T C A C G T A C T G G T A C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G A G T C C G T A A C T G A C T G A C G T A G T C C G T A A T G C C T G A A T C G
p-value:1e-7
log p-value:-1.709e+01
Information Content per bp:1.933
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.5 +/- 22.7bp
Average Position of motif in Background16.1 +/- 14.3bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA/MA0071.1/Jaspar

Match Rank:1
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:CTGTGACCTGCAT
---TGACCTTGAT
 A T G C A G C T A T C G A C G T A C T G C G T A A G T C A G T C A C G T A C T G G T A C C G T A A C G T
A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

NR4A2/MA0160.1/Jaspar

Match Rank:2
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:CTGTGACCTGCAT
--GTGACCTT---
 A T G C A G C T A T C G A C G T A C T G C G T A A G T C A G T C A C G T A C T G G T A C C G T A A C G T
A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:3
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CTGTGACCTGCAT
---TGACCTARTT
 A T G C A G C T A T C G A C G T A C T G C G T A A G T C A G T C A C G T A C T G G T A C C G T A A C G T
A C G T A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CTGTGACCTGCAT
---TGACCT----
 A T G C A G C T A T C G A C G T A C T G C G T A A G T C A G T C A C G T A C T G G T A C C G T A A C G T
A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:5
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CTGTGACCTGCAT---
--TTGACCTANTTATN
 A T G C A G C T A T C G A C G T A C T G C G T A A G T C A G T C A C G T A C T G G T A C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CTGTGACCTGCAT
--NTGACCTTGA-
 A T G C A G C T A T C G A C G T A C T G C G T A A G T C A G T C A C G T A C T G G T A C C G T A A C G T
A C G T A C G T C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CTGTGACCTGCAT
---TGACCTYA--
 A T G C A G C T A T C G A C G T A C T G C G T A A G T C A G T C A C G T A C T G G T A C C G T A A C G T
A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:8
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CTGTGACCTGCAT
--ATGACCTTGA-
 A T G C A G C T A T C G A C G T A C T G C G T A A G T C A G T C A C G T A C T G G T A C C G T A A C G T
A C G T A C G T C G T A G A C T T C A G G T C A T A G C G T A C A G C T G A C T A T C G C T G A A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:9
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CTGTGACCTGCAT
---TGACCYCT--
 A T G C A G C T A T C G A C G T A C T G C G T A A G T C A G T C A C G T A C T G G T A C C G T A A C G T
A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T

ESRRB/MA0141.3/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CTGTGACCTGCAT
-NATGACCTTGA-
 A T G C A G C T A T C G A C G T A C T G C G T A A G T C A G T C A C G T A C T G G T A C C G T A A C G T
A C G T C G A T C G T A G A C T C T A G T C G A T A G C A G T C A G C T C G A T A T C G C T G A A C G T