Information for 13-ACCTAATTAA (Motif 39)

G T C A A T G C A G T C A C G T C G T A C G T A A C G T A C G T C G T A C G T A
Reverse Opposite:
A C G T A C G T C G T A C G T A C G A T A C G T C G T A A C T G A T C G A C G T
p-value:1e-7
log p-value:-1.734e+01
Information Content per bp:1.919
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif11.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets51.5 +/- 24.3bp
Average Position of motif in Background44.7 +/- 40.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

mix-a/MA0621.1/Jaspar

Match Rank:1
Score:0.88
Offset:1
Orientation:reverse strand
Alignment:ACCTAATTAA--
-NCTAATTAANN
 G T C A A T G C A G T C A C G T C G T A C G T A A C G T A C G T C G T A C G T A A C G T A C G T
A C G T G T C A G A T C A C G T C G T A C G T A A C G T A C G T C G T A C T G A G A C T A C G T

LBX1/MA0618.1/Jaspar

Match Rank:2
Score:0.87
Offset:2
Orientation:reverse strand
Alignment:ACCTAATTAA
--CTAATTAA
 G T C A A T G C A G T C A C G T C G T A C G T A A C G T A C G T C G T A C G T A
A C G T A C G T T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A

LHX2/MA0700.1/Jaspar

Match Rank:3
Score:0.85
Offset:1
Orientation:forward strand
Alignment:ACCTAATTAA-
-ACTAATTAAC
 G T C A A T G C A G T C A C G T C G T A C G T A A C G T A C G T C G T A C G T A A C G T
A C G T T C G A A G T C G A C T G T C A C T G A A C G T A C G T C T G A C T G A A T G C

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:4
Score:0.84
Offset:1
Orientation:reverse strand
Alignment:ACCTAATTAA
-NCTAATTA-
 G T C A A T G C A G T C A C G T C G T A C G T A A C G T A C G T C G T A C G T A
A C G T T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A A C G T

POU6F2/MA0793.1/Jaspar

Match Rank:5
Score:0.83
Offset:0
Orientation:forward strand
Alignment:ACCTAATTAA
AGCTCATTAT
 G T C A A T G C A G T C A C G T C G T A C G T A A C G T A C G T C G T A C G T A
C T G A T A C G G A T C C A G T G T A C G T C A A G C T A C G T G C T A G C A T

PH0147.1_Pou3f2/Jaspar

Match Rank:6
Score:0.83
Offset:-2
Orientation:reverse strand
Alignment:--ACCTAATTAA-----
NNNACTAATTAATTANC
 A C G T A C G T G T C A A T G C A G T C A C G T C G T A C G T A A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
G A T C C T G A G T C A T G C A G A T C C A G T G T C A C G T A C G A T C A G T C T G A C T G A C A G T G C A T G C T A G C A T A T G C

PH0160.1_Shox2/Jaspar

Match Rank:7
Score:0.83
Offset:-3
Orientation:reverse strand
Alignment:---ACCTAATTAA----
NNNAATTAATTAANNNG
 A C G T A C G T A C G T G T C A A T G C A G T C A C G T C G T A C G T A A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
T A G C G T C A A G T C T C G A G T C A A G C T G A C T T C G A C G T A G A C T A G C T C T G A C T G A A T G C C A T G G T A C A T C G

NKX6-1/MA0674.1/Jaspar

Match Rank:8
Score:0.82
Offset:2
Orientation:forward strand
Alignment:ACCTAATTAA
--GTAATTAA
 G T C A A T G C A G T C A C G T C G T A C G T A A C G T A C G T C G T A C G T A
A C G T A C G T T A C G A G C T G T C A G T C A A C G T G C A T T C G A G C T A

VSX2/MA0726.1/Jaspar

Match Rank:9
Score:0.82
Offset:2
Orientation:forward strand
Alignment:ACCTAATTAA
--CTAATTAG
 G T C A A T G C A G T C A C G T C G T A C G T A A C G T A C G T C G T A C G T A
A C G T A C G T A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G

PH0143.1_Pou2f1/Jaspar

Match Rank:10
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-ACCTAATTAA-----
TACTTAATTAATNNAN
 A C G T G T C A A T G C A G T C A C G T C G T A C G T A A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
G C A T C G T A T G A C G A C T C G A T G T C A C G T A C G A T A C G T C G T A C G T A G A C T C G T A G A C T C T G A G A C T