Information for 23-YCAGCCAMTAGGTGGC (Motif 34)

A G C T G A T C C G T A C T A G T G A C A G T C C G T A T G A C G A C T G C T A A C T G A C T G C A G T T A C G A C T G T G A C
Reverse Opposite:
A C T G T A G C A T G C G C T A A G T C G T A C C A G T C T G A A C T G G C A T C T A G A C T G A G T C C G A T C T A G T C G A
p-value:1e-8
log p-value:-2.006e+01
Information Content per bp:1.686
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.48%
Number of Background Sequences with motif55.3
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets47.9 +/- 20.3bp
Average Position of motif in Background54.5 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.73
Offset:1
Orientation:forward strand
Alignment:YCAGCCAMTAGGTGGC----
-TGGCCACCAGGGGGCGCTA
 A G C T G A T C C G T A C T A G T G A C A G T C C G T A T G A C G A C T G C T A A C T G A C T G C A G T T A C G A C T G T G A C A C G T A C G T A C G T A C G T
A C G T G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:YCAGCCAMTAGGTGGC-----
-TGGCCACCAGGTGGCACTNT
 A G C T G A T C C G T A C T A G T G A C A G T C C G T A T G A C G A C T G C T A A C T G A C T G C A G T T A C G A C T G T G A C A C G T A C G T A C G T A C G T A C G T
A C G T G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:YCAGCCAMTAGGTGGC-------
---GCCASCAGGGGGCGCYVNNG
 A G C T G A T C C G T A C T A G T G A C A G T C C G T A T G A C G A C T G C T A A C T G A C T G C A G T T A C G A C T G T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:YCAGCCAMTAGGTGGC
BCAGACWA--------
 A G C T G A T C C G T A C T A G T G A C A G T C C G T A T G A C G A C T G C T A A C T G A C T G C A G T T A C G A C T G T G A C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SCRT2/MA0744.1/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:YCAGCCAMTAGGTGGC
--ATGCAACAGGTGG-
 A G C T G A T C C G T A C T A G T G A C A G T C C G T A T G A C G A C T G C T A A C T G A C T G C A G T T A C G A C T G T G A C
A C G T A C G T T C G A G C A T A C T G G T A C T G C A C G T A G T A C G T C A T C A G A T C G G C A T C A T G A T C G A C G T

SCRT1/MA0743.1/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:forward strand
Alignment:YCAGCCAMTAGGTGGC-
--GAGCAACAGGTGGTT
 A G C T G A T C C G T A C T A G T G A C A G T C C G T A T G A C G A C T G C T A A C T G A C T G C A G T T A C G A C T G T G A C A C G T
A C G T A C G T T C A G G C T A A C T G G A T C G T C A C G T A G T A C C G T A C T A G A C T G A G C T C A T G A C T G A G C T G A C T

NFY(CCAAT)/Promoter/Homer

Match Rank:7
Score:0.57
Offset:2
Orientation:forward strand
Alignment:YCAGCCAMTAGGTGGC
--AGCCAATCGG----
 A G C T G A T C C G T A C T A G T G A C A G T C C G T A T G A C G A C T G C T A A C T G A C T G C A G T T A C G A C T G T G A C
A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T A C G T A C G T

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:YCAGCCAMTAGGTGGC
------NNCAGGTGNN
 A G C T G A T C C G T A C T A G T G A C A G T C C G T A T G A C G A C T G C T A A C T G A C T G C A G T T A C G A C T G T G A C
A C G T A C G T A C G T A C G T A C G T A C G T C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:9
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:YCAGCCAMTAGGTGGC-
-----SDGCAGGTGCNS
 A G C T G A T C C G T A C T A G T G A C A G T C C G T A T G A C G A C T G C T A A C T G A C T G C A G T T A C G A C T G T G A C A C G T
A C G T A C G T A C G T A C G T A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.52
Offset:9
Orientation:forward strand
Alignment:YCAGCCAMTAGGTGGC-
---------AGGTGTCA
 A G C T G A T C C G T A C T A G T G A C A G T C C G T A T G A C G A C T G C T A A C T G A C T G C A G T T A C G A C T G T G A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A