Information for 9-GTCACTCAATGTC (Motif 19)

A C T G A C G T A G T C C G T A A T G C A C G T A G T C C G T A C G T A A C G T A C T G A C G T A T G C
Reverse Opposite:
A T C G C G T A A G T C C G T A C G A T C G A T A C T G C G T A A T C G A C G T A C T G G T C A A G T C
p-value:1e-11
log p-value:-2.563e+01
Information Content per bp:1.916
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.0 +/- 28.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:1
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---GTCACTCAATGTC
SCTGTCAVTCAV----
 A C G T A C G T A C G T A C T G A C G T A G T C C G T A A T G C A C G T A G T C C G T A C G T A A C G T A C T G A C G T A T G C
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GTCACTCAATGTC
NCTGTCAATCAN----
 A C G T A C G T A C G T A C T G A C G T A G T C C G T A A T G C A C G T A G T C C G T A C G T A A C G T A C T G A C G T A T G C
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:3
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GTCACTCAATGTC
GSCTGTCACTCA-----
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C C G T A A T G C A C G T A G T C C G T A C G T A A C G T A C T G A C G T A T G C
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GTCACTCAATGTC
AGCCACTCAAG---
 A C G T A C T G A C G T A G T C C G T A A T G C A C G T A G T C C G T A C G T A A C G T A C T G A C G T A T G C
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GTCACTCAATGTC
AASCACTCAA----
 A C G T A C T G A C G T A G T C C G T A A T G C A C G T A G T C C G T A C G T A A C G T A C T G A C G T A T G C
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GTCACTCAATGTC
MRSCACTYAA----
 A C G T A C T G A C G T A G T C C G T A A T G C A C G T A G T C C G T A C G T A A C G T A C T G A C G T A T G C
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T A C G T A C G T

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GTCACTCAATGTC-
GGGTTACTANAGGTCA
 A C G T A C G T A C T G A C G T A G T C C G T A A T G C A C G T A G T C C G T A C G T A A C G T A C T G A C G T A T G C A C G T
C T A G C A T G C A T G A G C T G A C T C G T A G A T C A G C T G T C A A T G C T C G A C T A G C A T G A C G T A G T C C T G A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GTCACTCAATGTC
NSCACTYVAV---
 A C T G A C G T A G T C C G T A A T G C A C G T A G T C C G T A C G T A A C G T A C T G A C G T A T G C
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:9
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GTCACTCAATGTC
----CTCATTGTC
 A C T G A C G T A G T C C G T A A T G C A C G T A G T C C G T A C G T A A C G T A C T G A C G T A T G C
A C G T A C G T A C G T A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GTCACTCAATGTC
ATCACCCCAT---
 A C T G A C G T A G T C C G T A A T G C A C G T A G T C C G T A C G T A A C G T A C T G A C G T A T G C
T C G A G C A T A T G C C T G A A T G C T A G C A G T C G T A C T C G A A G C T A C G T A C G T A C G T