Information for 1-RNBCAGYSAWGCGTGA (Motif 1)

T C A G C T A G A C G T G A T C C T G A T A C G A G C T A T G C C T G A C G T A A T C G A G T C T C A G C A G T C T A G C T G A
Reverse Opposite:
G A C T A G T C G T C A A G T C T C A G A T G C G C A T G A C T T A C G T C G A A T G C G A C T C T A G T G A C G A C T A G T C
p-value:1e-123
log p-value:-2.848e+02
Information Content per bp:1.538
Number of Target Sequences with motif131.0
Percentage of Target Sequences with motif17.65%
Number of Background Sequences with motif413.9
Percentage of Background Sequences with motif0.87%
Average Position of motif in Targets52.3 +/- 22.4bp
Average Position of motif in Background50.5 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX5/MA0014.2/Jaspar

Match Rank:1
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--RNBCAGYSAWGCGTGA-
GAGGGCAGCCAAGCGTGAC
 A C G T A C G T T C A G C T A G A C G T G A T C C T G A T A C G A G C T A T G C C T G A C G T A A T C G A G T C T C A G C A G T C T A G C T G A A C G T
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.89
Offset:2
Orientation:forward strand
Alignment:RNBCAGYSAWGCGTGA--
--GCAGCCAAGCGTGACN
 T C A G C T A G A C G T G A T C C T G A T A C G A G C T A T G C C T G A C G T A A T C G A G T C T C A G C A G T C T A G C T G A A C G T A C G T
A C G T A C G T A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.86
Offset:2
Orientation:reverse strand
Alignment:RNBCAGYSAWGCGTGA-
--SCAGYCADGCATGAC
 T C A G C T A G A C G T G A T C C T G A T A C G A G C T A T G C C T G A C G T A A T C G A G T C T C A G C A G T C T A G C T G A A C G T
A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:4
Score:0.84
Offset:-3
Orientation:forward strand
Alignment:---RNBCAGYSAWGCGTGA-
NGTGTTCAVTSAAGCGKAAA
 A C G T A C G T A C G T T C A G C T A G A C G T G A T C C T G A T A C G A G C T A T G C C T G A C G T A A T C G A G T C T C A G C A G T C T A G C T G A A C G T
A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A

PAX9/MA0781.1/Jaspar

Match Rank:5
Score:0.82
Offset:1
Orientation:reverse strand
Alignment:RNBCAGYSAWGCGTGA--
-TGCAGTCATGCGTGACG
 T C A G C T A G A C G T G A T C C T G A T A C G A G C T A T G C C T G A C G T A A T C G A G T C T C A G C A G T C T A G C T G A A C G T A C G T
A C G T C A G T A C T G G T A C C T G A A T C G A G C T A T G C C T G A C G A T A T C G A G T C C T A G A C G T C T A G C G T A G T A C T A C G

PAX1/MA0779.1/Jaspar

Match Rank:6
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:RNBCAGYSAWGCGTGA--
-NGCANTCATGCGTGACG
 T C A G C T A G A C G T G A T C C T G A T A C G A G C T A T G C C T G A C G T A A T C G A G T C T C A G C A G T C T A G C T G A A C G T A C G T
A C G T C A G T A C T G G T A C C T G A A T C G A G C T T A G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A G T A C T A C G

Pax6/MA0069.1/Jaspar

Match Rank:7
Score:0.75
Offset:3
Orientation:reverse strand
Alignment:RNBCAGYSAWGCGTGA-
---AANTCATGCGTGAA
 T C A G C T A G A C G T G A T C C T G A T A C G A G C T A T G C C T G A C G T A A T C G A G T C T C A G C A G T C T A G C T G A A C G T
A C G T A C G T A C G T G T C A T C G A A G T C G A C T A T G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A T C G A

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:8
Score:0.55
Offset:9
Orientation:forward strand
Alignment:RNBCAGYSAWGCGTGA
---------TGCGTG-
 T C A G C T A G A C G T G A T C C T G A T A C G A G C T A T G C C T G A C G T A A T C G A G T C T C A G C A G T C T A G C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G A C G T

MGA/MA0801.1/Jaspar

Match Rank:9
Score:0.52
Offset:8
Orientation:forward strand
Alignment:RNBCAGYSAWGCGTGA
--------AGGTGTGA
 T C A G C T A G A C G T G A T C C T G A T A C G A G C T A T G C C T G A C G T A A T C G A G T C T C A G C A G T C T A G C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A

Pax2/MA0067.1/Jaspar

Match Rank:10
Score:0.52
Offset:10
Orientation:reverse strand
Alignment:RNBCAGYSAWGCGTGA--
----------NCGTGACN
 T C A G C T A G A C G T G A T C C T G A T A C G A G C T A T G C C T G A C G T A A T C G A G T C T C A G C A G T C T A G C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T