Information for 5-CCGTTTTTAG (Motif 4)

A T G C G A T C T A C G G A C T G A C T G A C T G C A T A C G T C G T A T C A G
Reverse Opposite:
A G T C G C A T T G C A C G T A C T G A C T G A C T G A A T G C C T A G T A C G
p-value:1e-38
log p-value:-8.954e+01
Information Content per bp:1.664
Number of Target Sequences with motif200.0
Percentage of Target Sequences with motif24.97%
Number of Background Sequences with motif4343.2
Percentage of Background Sequences with motif9.11%
Average Position of motif in Targets47.5 +/- 26.5bp
Average Position of motif in Background50.0 +/- 30.8bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEF2D/MA0773.1/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-CCGTTTTTAG-
TCTATTTATAGN
 A C G T A T G C G A T C T A C G G A C T G A C T G A C T G C A T A C G T C G T A T C A G A C G T
C A G T A G T C A G C T C G T A C G A T G C A T C G A T G C T A C A G T C T G A C T A G G A C T

MEF2A/MA0052.3/Jaspar

Match Rank:2
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CCGTTTTTAG-
TCTATTTTTAGA
 A C G T A T G C G A T C T A C G G A C T G A C T G A C T G C A T A C G T C G T A T C A G A C G T
C A G T G A T C C A G T C T G A C G A T C G A T C G A T G C A T C G A T C T G A C A T G G T C A

MEF2B/MA0660.1/Jaspar

Match Rank:3
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CCGTTTTTAG-
GCTATTTATAGC
 A C G T A T G C G A T C T A C G G A C T G A C T G A C T G C A T A C G T C G T A T C A G A C G T
C A T G A G T C C A G T C G T A C G A T C G A T G C A T C G T A C G A T C T G A C A T G G A T C

MF0008.1_MADS_class/Jaspar

Match Rank:4
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CCGTTTTTAG
CCATATATGG
 A T G C G A T C T A C G G A C T G A C T G A C T G C A T A C G T C G T A T C A G
G A T C A G T C G C T A C G A T C G T A C G A T C G T A G C A T C T A G C A T G

MEF2C/MA0497.1/Jaspar

Match Rank:5
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CCGTTTTTAG---
TTCTATTTTTAGNNN
 A C G T A C G T A T G C G A T C T A C G G A C T G A C T G A C T G C A T A C G T C G T A T C A G A C G T A C G T A C G T
C G A T C A G T A G T C A G C T C T G A G C A T G C A T G A C T G A C T C G A T C T G A C A T G G T A C G C T A G A C T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:6
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CCGTTTTTAG-
GCTATTTTTAGC
 A C G T A T G C G A T C T A C G G A C T G A C T G A C T G C A T A C G T C G T A T C A G A C G T
C A T G A G T C A G C T C G T A C G A T C G A T G C A T G C A T C G A T C T G A C A T G T G A C

PB0184.1_Tbp_2/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CCGTTTTTAG-----
CCGATTTAAGCGACC
 A T G C G A T C T A C G G A C T G A C T G A C T G C A T A C G T C G T A T C A G A C G T A C G T A C G T A C G T A C G T
T G A C A T G C A T C G C G T A G A C T C G A T C G A T G T C A G C T A A T C G T A G C A C T G G C T A A C G T G T A C

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CCGTTTTTAG-
KCTATTTTTRGH
 A C G T A T G C G A T C T A C G G A C T G A C T G A C T G C A T A C G T C G T A T C A G A C G T
C A T G A G T C G A C T C G T A C G A T G C A T G C A T G C A T C G A T C T G A C A T G G T A C

TATA-Box(TBP)/Promoter/Homer

Match Rank:9
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CCGTTTTTAG--
CCTTTTATAGNC
 A T G C G A T C T A C G G A C T G A C T G A C T G C A T A C G T C G T A T C A G A C G T A C G T
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CCGTTTTTAG
CTATTTTTGG
 A T G C G A T C T A C G G A C T G A C T G A C T G C A T A C G T C G T A T C A G
A T G C A G C T G T C A C G A T C G A T A G C T G A C T G C A T C T G A C A T G