Information for 3-SCCTCACTGMTGK (Motif 7)

A T C G G T A C A T G C C G A T A G T C G T C A A G T C C G A T A T C G G T C A A C G T A C T G A C G T
Reverse Opposite:
G T C A A G T C C G T A A C G T A T G C C G T A T A C G A C G T A C T G C G T A A T C G C A T G A T G C
p-value:1e-13
log p-value:-3.140e+01
Information Content per bp:1.763
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.42%
Number of Background Sequences with motif6.9
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets48.2 +/- 29.1bp
Average Position of motif in Background48.2 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:SCCTCACTGMTGK-
--CCCCCTGCTGTG
 A T C G G T A C A T G C C G A T A G T C G T C A A G T C C G A T A T C G G T C A A C G T A C T G A C G T A C G T
A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

PB0176.1_Sox5_2/Jaspar

Match Rank:2
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:SCCTCACTGMTGK--
NNCTNAATTATGANN
 A T C G G T A C A T G C C G A T A G T C G T C A A G T C C G A T A T C G G T C A A C G T A C T G A C G T A C G T A C G T
G A C T G A T C A T G C A C G T G C A T C T G A C G T A C G A T A C G T G T C A G A C T T C A G G C T A C G A T G C T A

PH0134.1_Pbx1/Jaspar

Match Rank:3
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:SCCTCACTGMTGK----
NNNNNATTGATGNGTGN
 A T C G G T A C A T G C C G A T A G T C G T C A A G T C C G A T A T C G G T C A A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.55
Offset:0
Orientation:forward strand
Alignment:SCCTCACTGMTGK--
GGCCYCCTGCTGDGH
 A T C G G T A C A T G C C G A T A G T C G T C A A G T C C G A T A T C G G T C A A C G T A C T G A C G T A C G T A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:5
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:SCCTCACTGMTGK
---TGATTGATGA
 A T C G G T A C A T G C C G A T A G T C G T C A A G T C C G A T A T C G G T C A A C G T A C T G A C G T
A C G T A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

POL002.1_INR/Jaspar

Match Rank:6
Score:0.52
Offset:3
Orientation:forward strand
Alignment:SCCTCACTGMTGK
---TCAGTCTT--
 A T C G G T A C A T G C C G A T A G T C G T C A A G T C C G A T A T C G G T C A A C G T A C T G A C G T
A C G T A C G T A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:7
Score:0.52
Offset:3
Orientation:forward strand
Alignment:SCCTCACTGMTGK--
---TGATTRATGGCY
 A T C G G T A C A T G C C G A T A G T C G T C A A G T C C G A T A T C G G T C A A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

Hoxa9/MA0594.1/Jaspar

Match Rank:8
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:SCCTCACTGMTGK-
---TGATTTATGGC
 A T C G G T A C A T G C C G A T A G T C G T C A A G T C C G A T A T C G G T C A A C G T A C T G A C G T A C G T
A C G T A C G T A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

PBX1/MA0070.1/Jaspar

Match Rank:9
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:SCCTCACTGMTGK
-TTTGATTGATGN
 A T C G G T A C A T G C C G A T A G T C G T C A A G T C C G A T A T C G G T C A A C G T A C T G A C G T
A C G T C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G

ZIC1/MA0696.1/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:SCCTCACTGMTGK-
GACCCCCCGCTGTG
 A T C G G T A C A T G C C G A T A G T C G T C A A G T C C G A T A T C G G T C A A C G T A C T G A C G T A C G T
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G