Information for 19-TACAGCTCAG (Motif 39)

A C G T C G T A A G T C C G T A A C T G A T G C C G A T A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G C G T A A T C G A G T C A C G T A C T G A C G T C G T A
p-value:1e-7
log p-value:-1.641e+01
Information Content per bp:1.934
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets32.5 +/- 26.0bp
Average Position of motif in Background36.2 +/- 10.6bp
Strand Bias (log2 ratio + to - strand density)-2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rhox11/MA0629.1/Jaspar

Match Rank:1
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------TACAGCTCAG-
TCNNTTTACAGCGNNNT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A A C T G A T G C C G A T A G T C C G T A A C T G A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

PH0157.1_Rhox11_1/Jaspar

Match Rank:2
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------TACAGCTCAG-
TCNNTTTACAGCGNNNT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A A C T G A T G C C G A T A G T C C G T A A C T G A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TACAGCTCAG
CACAGN----
 A C G T C G T A A G T C C G T A A C T G A T G C C G A T A G T C C G T A A C T G
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T

PH0158.1_Rhox11_2/Jaspar

Match Rank:4
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------TACAGCTCAG-
TCNCTTTACAGCGNNNT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A A C T G A T G C C G A T A G T C C G T A A C T G A C G T
C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T

RORA/MA0071.1/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TACAGCTCAG
ATCAAGGTCA-
 A C G T A C G T C G T A A G T C C G T A A C T G A T G C C G A T A G T C C G T A A C T G
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:6
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TACAGCTCAG
ANGNAAAGGTCA-
 A C G T A C G T A C G T A C G T C G T A A G T C C G T A A C T G A T G C C G A T A G T C C G T A A C T G
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TACAGCTCAG
CAAAGGTCAG
 A C G T C G T A A G T C C G T A A C T G A T G C C G A T A G T C C G T A A C T G
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TACAGCTCAG
-TRAGGTCA-
 A C G T C G T A A G T C C G T A A C T G A T G C C G A T A G T C C G T A A C T G
A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---TACAGCTCAG---
TCTCAAAGGTCACCTG
 A C G T A C G T A C G T A C G T C G T A A G T C C G T A A C T G A T G C C G A T A G T C C G T A A C T G A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:10
Score:0.57
Offset:3
Orientation:forward strand
Alignment:TACAGCTCAG
---AGGTCA-
 A C G T C G T A A G T C C G T A A C T G A T G C C G A T A G T C C G T A A C T G
A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T