Information for 12-GCAAATTTGGYTCAAA (Motif 9)

A C T G G T A C C G T A C T G A C G T A C G A T G C A T A C G T A C T G A C T G G A C T G C A T G T A C C G T A C G T A C G T A
Reverse Opposite:
C G A T G A C T C G A T A C T G C G T A C T G A T G A C G T A C C G T A C G T A C G T A C G A T A G C T A C G T C A T G G T A C
p-value:1e-12
log p-value:-2.948e+01
Information Content per bp:1.687
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.70%
Number of Background Sequences with motif39.6
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets52.3 +/- 22.9bp
Average Position of motif in Background47.1 +/- 24.9bp
Strand Bias (log2 ratio + to - strand density)1.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA(var.2)/MA0072.1/Jaspar

Match Rank:1
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GCAAATTTGGYTCAAA
-TATAAGTAGGTCAA-
 A C T G G T A C C G T A C T G A C G T A C G A T G C A T A C G T A C T G A C T G G A C T G C A T G T A C C G T A C G T A C G T A
A C G T C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T

NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:2
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----GCAAATTTGGYTCAAA
NANTGGAAAAANTGAGTCAN-
 A C G T A C G T A C G T A C G T A C G T A C T G G T A C C G T A C T G A C G T A C G A T G C A T A C G T A C T G A C T G G A C T G C A T G T A C C G T A C G T A C G T A
T A C G C T G A T C G A C G A T C T A G C T A G T C G A C T G A T C G A T C G A C G T A T C G A G C A T C A T G C G T A T A C G G C A T T G A C C G T A A G C T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:3
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GCAAATTTGGYTCAAA
ATATGCAAATNNN-------
 A C G T A C G T A C G T A C G T A C T G G T A C C G T A C T G A C G T A C G A T G C A T A C G T A C T G A C T G G A C T G C A T G T A C C G T A C G T A C G T A
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GCAAATTTGGYTCAAA
ATATGCAAAT----------
 A C G T A C G T A C G T A C G T A C T G G T A C C G T A C T G A C G T A C G A T G C A T A C G T A C T G A C T G G A C T G C A T G T A C C G T A C G T A C G T A
G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GCAAATTTGGYTCAAA
TTATGCAAAT----------
 A C G T A C G T A C G T A C G T A C T G G T A C C G T A C T G A C G T A C G A T G C A T A C G T A C T G A C T G G A C T G C A T G T A C C G T A C G T A C G T A
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZBTB18/MA0698.1/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GCAAATTTGGYTCAAA
NAACATCTGGATN---
 A C T G G T A C C G T A C T G A C G T A C G A T G C A T A C G T A C T G A C T G G A C T G C A T G T A C C G T A C G T A C G T A
T C A G G T C A C T G A A G T C T G C A C A G T T A G C G C A T C A T G A C T G T G C A G C A T C A T G A C G T A C G T A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GCAAATTTGGYTCAAA
WATGCAAATGAG-------
 A C G T A C G T A C G T A C T G G T A C C G T A C T G A C G T A C G A T G C A T A C G T A C T G A C T G G A C T G C A T G T A C C G T A C G T A C G T A
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:8
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------GCAAATTTGGYTCAAA
TTGTATGCAAATTAGA------
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G G T A C C G T A C T G A C G T A C G A T G C A T A C G T A C T G A C T G G A C T G C A T G T A C C G T A C G T A C G T A
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A A C G T A C G T A C G T A C G T A C G T A C G T

PB0146.1_Mafk_2/Jaspar

Match Rank:9
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----GCAAATTTGGYTCAAA
CCTTGCAATTTTTNN-----
 A C G T A C G T A C G T A C G T A C T G G T A C C G T A C T G A C G T A C G A T G C A T A C G T A C T G A C T G G A C T G C A T G T A C C G T A C G T A C G T A
A G T C T A G C C A G T A C G T C T A G G T A C C T G A G T C A C G A T C G A T G A C T G A C T A G C T C A G T A G T C A C G T A C G T A C G T A C G T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:10
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------GCAAATTTGGYTCAAA
TTGTATGCAAATTAGA------
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G G T A C C G T A C T G A C G T A C G A T G C A T A C G T A C T G A C T G G A C T G C A T G T A C C G T A C G T A C G T A
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A A C G T A C G T A C G T A C G T A C G T A C G T