Information for 19-TCCYTTTHAARCC (Motif 28)

G C A T G T A C G T A C A G T C A C G T C G A T A C G T G C A T G C T A C G T A C T G A T G A C G T A C
Reverse Opposite:
A C T G A C T G G A C T C G A T C G A T C G T A C G T A C G T A C G T A C T A G A C T G A C T G C G T A
p-value:1e-7
log p-value:-1.728e+01
Information Content per bp:1.690
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.75%
Number of Background Sequences with motif301.2
Percentage of Background Sequences with motif0.62%
Average Position of motif in Targets46.3 +/- 26.6bp
Average Position of motif in Background48.7 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.74
Offset:1
Orientation:forward strand
Alignment:TCCYTTTHAARCC
-CCTTTTATAGNC
 G C A T G T A C G T A C A G T C A C G T C G A T A C G T G C A T G C T A C G T A C T G A T G A C G T A C
A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:TCCYTTTHAARCC-
----TTTGAAACCG
 G C A T G T A C G T A C A G T C A C G T C G A T A C G T G C A T G C T A C G T A C T G A T G A C G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

HLTF/MA0109.1/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TCCYTTTHAARCC
AACCTTATAT----
 A C G T G C A T G T A C G T A C A G T C A C G T C G A T A C G T G C A T G C T A C G T A C T G A T G A C G T A C
C G T A G C T A G T A C A G T C C G A T A C G T C G T A A C G T T C G A G A C T A C G T A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TCCYTTTHAARCC
-CCYMATAAAA--
 G C A T G T A C G T A C A G T C A C G T C G A T A C G T G C A T G C T A C G T A C T G A T G A C G T A C
A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TCCYTTTHAARCC
NNNNNNCTTTTATAN--
 A C G T A C G T A C G T A C G T G C A T G T A C G T A C A G T C A C G T C G A T A C G T G C A T G C T A C G T A C T G A T G A C G T A C
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T

TBP/MA0108.2/Jaspar

Match Rank:6
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TCCYTTTHAARCC
NNNNNNCTTTTATAN--
 A C G T A C G T A C G T A C G T G C A T G T A C G T A C A G T C A C G T C G A T A C G T G C A T G C T A C G T A C T G A T G A C G T A C
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:7
Score:0.55
Offset:1
Orientation:forward strand
Alignment:TCCYTTTHAARCC
-NGCAATTAAA--
 G C A T G T A C G T A C A G T C A C G T C G A T A C G T G C A T G C T A C G T A C T G A T G A C G T A C
A C G T T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:TCCYTTTHAARCC
--CCTTTGATGT-
 G C A T G T A C G T A C A G T C A C G T C G A T A C G T G C A T G C T A C G T A C T G A T G A C G T A C
A C G T A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:9
Score:0.55
Offset:3
Orientation:forward strand
Alignment:TCCYTTTHAARCC
---ATTTGAATT-
 G C A T G T A C G T A C A G T C A C G T C G A T A C G T G C A T G C T A C G T A C T G A T G A C G T A C
A C G T A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:TCCYTTTHAARCC
-NCYAATAAAA--
 G C A T G T A C G T A C A G T C A C G T C G A T A C G T G C A T G C T A C G T A C T G A T G A C G T A C
A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T