Information for 18-CTTTATTAGACTG (Motif 28)

A G T C A G C T A C G T A C G T C G T A A C G T A C G T C G T A A C T G C T G A A G T C A C G T A C T G
Reverse Opposite:
A G T C C G T A A C T G A G C T A G T C C G A T G T C A C G T A A C G T C G T A C G T A C T G A A C T G
p-value:1e-8
log p-value:-1.967e+01
Information Content per bp:1.933
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.52%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.0 +/- 34.0bp
Average Position of motif in Background7.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA13/MA0650.1/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CTTTATTAGACTG
TTTTTATTGG----
 A C G T A G T C A G C T A C G T A C G T C G T A A C G T A C G T C G T A A C T G C T G A A G T C A C G T A C T G
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTTTATTAGACTG
TTTTATTRGN---
 A G T C A G C T A C G T A C G T C G T A A C G T A C G T C G T A A C T G C T G A A G T C A C G T A C T G
C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A A C G T A C G T A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:3
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CTTTATTAGACTG
NNAATTTTATTGGNTN-
 A C G T A C G T A C G T A C G T A G T C A G C T A C G T A C G T C G T A A C G T A C G T C G T A A C T G C T G A A G T C A C G T A C T G
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CTTTATTAGACTG
NTTTTATTGG----
 A C G T A G T C A G C T A C G T A C G T C G T A A C G T A C G T C G T A A C T G C T G A A G T C A C G T A C T G
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CTTTATTAGACTG
TTTTATKRGG---
 A G T C A G C T A C G T A C G T C G T A A C G T A C G T C G T A A C T G C T G A A G T C A C G T A C T G
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G A C G T A C G T A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:6
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----CTTTATTAGACTG
NTNAATTTTATTGNATT-
 A C G T A C G T A C G T A C G T A C G T A G T C A G C T A C G T A C G T C G T A A C G T A C G T C G T A A C T G C T G A A G T C A C G T A C T G
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTTTATTAGACTG
NTTTTATTGG----
 A C G T A G T C A G C T A C G T A C G T C G T A A C G T A C G T C G T A A C T G C T G A A G T C A C G T A C T G
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T A C G T A C G T A C G T

LMX1B/MA0703.1/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CTTTATTAGACTG
-TTAATTAN----
 A G T C A G C T A C G T A C G T C G T A A C G T A C G T C G T A A C T G C T G A A G T C A C G T A C T G
A C G T A G C T C G A T G C T A G C T A C G A T G C A T C T G A T G C A A C G T A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CTTTATTAGACTG
TTTTATTGC----
 A G T C A G C T A C G T A C G T C G T A A C G T A C G T C G T A A C T G C T G A A G T C A C G T A C T G
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CTTTATTAGACTG
NNANTTTTATTGGNNN-
 A C G T A C G T A C G T A C G T A G T C A G C T A C G T A C G T C G T A A C G T A C G T C G T A A C T G C T G A A G T C A C G T A C T G
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G A C G T