Information for 13-AATAATAGCCACA (Motif 12)

G C T A G T C A C G A T G C T A T C G A C G A T C G T A C T A G G T A C G T A C G C T A T G A C G C T A
Reverse Opposite:
C G A T A C T G C G A T C A T G A C T G G A T C G C A T G C T A A G C T C G A T G C T A C A G T C G A T
p-value:1e-9
log p-value:-2.198e+01
Information Content per bp:1.544
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.8 +/- 12.3bp
Average Position of motif in Background48.2 +/- 21.7bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX1/MA0002.2/Jaspar

Match Rank:1
Score:0.69
Offset:5
Orientation:reverse strand
Alignment:AATAATAGCCACA---
-----AAACCACAGAN
 G C T A G T C A C G A T G C T A T C G A C G A T C G T A C T A G G T A C G T A C G C T A T G A C G C T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:2
Score:0.69
Offset:5
Orientation:forward strand
Alignment:AATAATAGCCACA--
-----AAACCACANN
 G C T A G T C A C G A T G C T A T C G A C G A T C G T A C T A G G T A C G T A C G C T A T G A C G C T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:3
Score:0.68
Offset:4
Orientation:forward strand
Alignment:AATAATAGCCACA---
----NWAACCACADNN
 G C T A G T C A C G A T G C T A T C G A C G A T C G T A C T A G G T A C G T A C G C T A T G A C G C T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:AATAATAGCCACA--
-----AAACCACAGC
 G C T A G T C A C G A T G C T A T C G A C G A T C G T A C T A G G T A C G T A C G C T A T G A C G C T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:5
Score:0.66
Offset:4
Orientation:forward strand
Alignment:AATAATAGCCACA-
----NAAACCACAG
 G C T A G T C A C G A T G C T A T C G A C G A T C G T A C T A G G T A C G T A C G C T A T G A C G C T A A C G T
A C G T A C G T A C G T A C G T T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:6
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---AATAATAGCCACA
GCTAAAAATAGC----
 A C G T A C G T A C G T G C T A G T C A C G A T G C T A T C G A C G A T C G T A C T A G G T A C G T A C G C T A T G A C G C T A
A C T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G C A T C T G A T C A G G T A C A C G T A C G T A C G T A C G T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AATAATAGCCACA
DCYAAAAATAGM----
 A C G T A C G T A C G T G C T A G T C A C G A T G C T A T C G A C G A T C G T A C T A G G T A C G T A C G C T A T G A C G C T A
C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C A C G T A C G T A C G T A C G T

MEF2C/MA0497.1/Jaspar

Match Rank:8
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----AATAATAGCCACA
ATGCTAAAAATAGAA---
 A C G T A C G T A C G T A C G T A C G T G C T A G T C A C G A T G C T A T C G A C G A T C G T A C T A G G T A C G T A C G C T A T G A C G C T A
C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A A C G T A C G T A C G T

MEF2B/MA0660.1/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AATAATAGCCACA
GCTATAAATAGC----
 A C G T A C G T A C G T G C T A G T C A C G A T G C T A T C G A C G A T C G T A C T A G G T A C G T A C G C T A T G A C G C T A
C T A G G T A C A G C T C G T A G C A T C G T A G C T A C G T A A C G T G C T A T C A G G T A C A C G T A C G T A C G T A C G T

Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AATAATAGCCACA---
YTAATTRAWWCCAGATGT
 A C G T A C G T G C T A G T C A C G A T G C T A T C G A C G A T C G T A C T A G G T A C G T A C G C T A T G A C G C T A A C G T A C G T A C G T
G A C T C G A T C T G A G T C A G A C T C G A T T C G A C G T A G C T A G C T A T G A C G T A C C G T A A C T G T G C A C G A T A C T G A C G T