Information for 5-CTGGCAASATGCCCCT (Motif 7)

A T G C C G A T C T A G A C T G A T G C T C G A C T G A T A G C C G T A C G A T C T A G A G T C T A G C A T G C G T A C A C G T
Reverse Opposite:
C G T A A C T G A T C G A C T G T C A G A G T C G C T A G A C T A T C G A G C T A C G T A T C G A G T C A G T C C G T A A T C G
p-value:1e-10
log p-value:-2.498e+01
Information Content per bp:1.707
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.7 +/- 26.6bp
Average Position of motif in Background38.5 +/- 1.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CTGGCAASATGCCCCT
CTGGCAGNCTGCCA--
 A T G C C G A T C T A G A C T G A T G C T C G A C T G A T A G C C G T A C G A T C T A G A G T C T A G C A T G C G T A C A C G T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:2
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CTGGCAASATGCCCCT
-TGGCACCATGCCAA-
 A T G C C G A T C T A G A C T G A T G C T C G A C T G A T A G C C G T A C G A T C T A G A G T C T A G C A T G C G T A C A C G T
A C G T A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CTGGCAASATGCCCCT
CTTGGCANNNTGCCAA-
 A C G T A T G C C G A T C T A G A C T G A T G C T C G A C T G A T A G C C G T A C G A T C T A G A G T C T A G C A T G C G T A C A C G T
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAASATGCCCCT
CTTGGCAA---------
 A C G T A T G C C G A T C T A G A C T G A T G C T C G A C T G A T A G C C G T A C G A T C T A G A G T C T A G C A T G C G T A C A C G T
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CTGGCAASATGCCCCT
TTGGCA----------
 A T G C C G A T C T A G A C T G A T G C T C G A C T G A T A G C C G T A C G A T C T A G A G T C T A G C A T G C G T A C A C G T
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAASATGCCCCT
NTTGGCANN--------
 A C G T A T G C C G A T C T A G A C T G A T G C T C G A C T G A T A G C C G T A C G A T C T A G A G T C T A G C A T G C G T A C A C G T
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:7
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------CTGGCAASATGCCCCT
CAATCACTGGCAGAAT------
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C C G A T C T A G A C T G A T G C T C G A C T G A T A G C C G T A C G A T C T A G A G T C T A G C A T G C G T A C A C G T
A G T C G C T A T C G A G C A T G T A C C T G A T G A C C G A T A C T G A C T G A G T C C T G A C T A G G C T A C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CTGGCAASATGCCCCT
SCCTAGCAACAG------
 A C G T A C G T A T G C C G A T C T A G A C T G A T G C T C G A C T G A T A G C C G T A C G A T C T A G A G T C T A G C A T G C G T A C A C G T
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:9
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---CTGGCAASATGCCCCT
GGTCTGGCAT---------
 A C G T A C G T A C G T A T G C C G A T C T A G A C T G A T G C T C G A C T G A T A G C C G T A C G A T C T A G A G T C T A G C A T G C G T A C A C G T
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--CTGGCAASATGCCCCT
TNNGGGCAG---------
 A C G T A C G T A T G C C G A T C T A G A C T G A T G C T C G A C T G A T A G C C G T A C G A T C T A G A G T C T A G C A T G C G T A C A C G T
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T