Information for 7-GRAWCTMACCARA (Motif 5)

A C T G C T G A C G T A C G A T A G T C A C G T G T A C C G T A A G T C A G T C C G T A C T A G G T C A
Reverse Opposite:
A C G T A G T C A C G T A C T G A C T G A C G T A C T G C G T A A C T G C G T A A C G T A G C T A G T C
p-value:1e-11
log p-value:-2.666e+01
Information Content per bp:1.878
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.2 +/- 25.7bp
Average Position of motif in Background51.9 +/- 17.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:1
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GRAWCTMACCARA-
----NAAACCACAG
 A C T G C T G A C G T A C G A T A G T C A C G T G T A C C G T A A G T C A G T C C G T A C T A G G T C A A C G T
A C G T A C G T A C G T A C G T T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GRAWCTMACCARA
-NNACTTACCTN-
 A C T G C T G A C G T A C G A T A G T C A C G T G T A C C G T A A G T C A G T C C G T A C T A G G T C A
A C G T C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:GRAWCTMACCARA--
-----AAACCACAGC
 A C T G C T G A C G T A C G A T A G T C A C G T G T A C C G T A A G T C A G T C C G T A C T A G G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:4
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GRAWCTMACCARA---
----NWAACCACADNN
 A C T G C T G A C G T A C G A T A G T C A C G T G T A C C G T A A G T C A G T C C G T A C T A G G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GRAWCTMACCARA--
GGNTCTCGCGAGAAC
 A C T G C T G A C G T A C G A T A G T C A C G T G T A C C G T A A G T C A G T C C G T A C T A G G T C A A C G T A C G T
T A C G T C A G T G C A A G C T T G A C A G C T A G T C A C T G G A T C A C T G T C G A A C T G C T G A C T G A A T G C

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GRAWCTMACCARA-
TGACANARRCCAGRC
 A C G T A C T G C T G A C G T A C G A T A G T C A C G T G T A C C G T A A G T C A G T C C G T A C T A G G T C A A C G T
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C

DUXA/MA0884.1/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GRAWCTMACCARA
CTAATTTAATCAA-
 A C G T A C T G C T G A C G T A C G A T A G T C A C G T G T A C C G T A A G T C A G T C C G T A C T A G G T C A
G A T C G A C T C T G A T C G A G A C T A G C T A G C T T G C A C T G A A C G T A G T C C G T A C T G A A C G T

Foxk1/MA0852.1/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GRAWCTMACCARA---
AAAATGTAAACAAACAG
 A C G T A C T G C T G A C G T A C G A T A G T C A C G T G T A C C G T A A G T C A G T C C G T A C T A G G T C A A C G T A C G T A C G T
C G T A C T G A C G T A C G T A A C G T T C A G C G A T G T C A G C T A C G T A A G T C C G T A G C T A C G T A T A G C T C G A A T C G

PB0018.1_Foxk1_1/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GRAWCTMACCARA---
AAAATGTAAACAAACAG
 A C G T A C T G C T G A C G T A C G A T A G T C A C G T G T A C C G T A A G T C A G T C C G T A C T A G G T C A A C G T A C G T A C G T
C G T A C T G A C G T A C G T A A C G T T C A G C G A T G T C A G C T A C G T A A G T C C G T A G C T A C G T A T A G C T C G A A T C G

PH0040.1_Hmbox1/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GRAWCTMACCARA----
GANGTTAACTAGTTTNN
 A C T G C T G A C G T A C G A T A G T C A C G T G T A C C G T A A G T C A G T C C G T A C T A G G T C A A C G T A C G T A C G T A C G T
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C