Information for 9-GCTAGACTGC (Motif 9)

A T C G A G T C A G C T C G T A A C T G C T G A A G T C A C G T A C T G G T A C
Reverse Opposite:
A C T G A G T C G T C A A C T G A G C T G T A C C G A T C T G A A C T G A T G C
p-value:1e-9
log p-value:-2.195e+01
Information Content per bp:1.861
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.60%
Number of Background Sequences with motif68.7
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets30.8 +/- 23.4bp
Average Position of motif in Background48.7 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GCTAGACTGC
-CCAGACAG-
 A T C G A G T C A G C T C G T A A C T G C T G A A G T C A C G T A C T G G T A C
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GCTAGACTGC-
-CCAGACRSVB
 A T C G A G T C A G C T C G T A A C T G C T G A A G T C A C G T A C T G G T A C A C G T
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----GCTAGACTGC
GTCATGCHTGRCTGS
 A C G T A C G T A C G T A C G T A C G T A T C G A G T C A G C T C G T A A C T G C T G A A G T C A C G T A C T G G T A C
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GCTAGACTGC
-BCAGACWA-
 A T C G A G T C A G C T C G T A A C T G C T G A A G T C A C G T A C T G G T A C
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GCTAGACTGC
TGTCTAGACG--
 A C G T A C G T A T C G A G T C A G C T C G T A A C T G C T G A A G T C A C G T A C T G G T A C
C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GCTAGACTGC---
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A T C G A G T C A G C T C G T A A C T G C T G A A G T C A C G T A C T G G T A C A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:7
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GCTAGACTGC
AGGTGNCAGACAG-
 A C G T A C G T A C G T A C G T A T C G A G T C A G C T C G T A A C T G C T G A A G T C A C G T A C T G G T A C
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.59
Offset:-6
Orientation:reverse strand
Alignment:------GCTAGACTGC
NGTCACGCTTGGCTGC
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G A G T C A G C T C G T A A C T G C T G A A G T C A C G T A C T G G T A C
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GCTAGACTGC
AGGTGHCAGACA--
 A C G T A C G T A C G T A C G T A T C G A G T C A G C T C G T A A C T G C T G A A G T C A C G T A C T G G T A C
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T

PAX5/MA0014.2/Jaspar

Match Rank:10
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----GCTAGACTGC----
GTCACGCTTGGCTGCNCNN
 A C G T A C G T A C G T A C G T A C G T A T C G A G T C A G C T C G T A A C T G C T G A A G T C A C G T A C T G G T A C A C G T A C G T A C G T A C G T
C A T G G A C T A G T C G T C A G A T C T C A G T A G C G A C T A G C T A T C G T C A G A T G C G A C T C T A G T G A C G A T C A G T C G C A T A G T C