Information for 5-CTCCATGGCGACCGCG (Motif 7)

A G T C A C G T G T A C A T G C G T C A A C G T A C T G A T C G A G T C T C A G C T G A A T G C A G T C A C T G A T G C A C T G
Reverse Opposite:
A G T C A T C G A G T C A C T G A T C G A G C T A G T C C T A G A T G C G T A C C G T A A C G T A T C G A C T G C G T A A C T G
p-value:1e-13
log p-value:-3.033e+01
Information Content per bp:1.806
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets76.5 +/- 9.8bp
Average Position of motif in Background59.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CTCCATGGCGACCGCG
TTGCCATGGCAACN---
 A C G T A G T C A C G T G T A C A T G C G T C A A C G T A C T G A T C G A G T C T C A G C T G A A T G C A G T C A C T G A T G C A C T G
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C A C G T A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:2
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CTCCATGGCGACCGCG
GTTGCCATGGCAAC----
 A C G T A C G T A G T C A C G T G T A C A T G C G T C A A C G T A C T G A T C G A G T C T C A G C T G A A T G C A G T C A C T G A T G C A C T G
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T A C G T A C G T A C G T

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:3
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CTCCATGGCGACCGCG
GTTGCCATGGCAACCG--
 A C G T A C G T A G T C A C G T G T A C A T G C G T C A A C G T A C T G A T C G A G T C T C A G C T G A A T G C A G T C A C T G A T G C A C T G
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G A C G T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:4
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CTCCATGGCGACCGCG
TACCATAGCAACGGT-
 A G T C A C G T G T A C A T G C G T C A A C G T A C T G A T C G A G T C T C A G C T G A A T G C A G T C A C T G A T G C A C T G
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CTCCATGGCGACCGCG
TTGCCATGGCAACC---
 A C G T A G T C A C G T G T A C A T G C G T C A A C G T A C T G A T C G A G T C T C A G C T G A A T G C A G T C A C T G A T G C A C T G
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C A C G T A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.53
Offset:2
Orientation:forward strand
Alignment:CTCCATGGCGACCGCG
--SCCTAGCAACAG--
 A G T C A C G T G T A C A T G C G T C A A C G T A C T G A T C G A G T C T C A G C T G A A T G C A G T C A C T G A T G C A C T G
A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T A C G T

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:7
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--CTCCATGGCGACCGCG
GTTGCCATGGCAACM---
 A C G T A C G T A G T C A C G T G T A C A T G C G T C A A C G T A C T G A T C G A G T C T C A G C T G A A T G C A G T C A C T G A T G C A C T G
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C A C G T A C G T A C G T

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:8
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:CTCCATGGCGACCGCG
-TCCCNNGGGACN---
 A G T C A C G T G T A C A T G C G T C A A C G T A C T G A T C G A G T C T C A G C T G A A T G C A G T C A C T G A T G C A C T G
A C G T G A C T A G T C A G T C A G T C G A C T C T G A A C T G C T A G A C T G C T G A T A G C G A T C A C G T A C G T A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:9
Score:0.50
Offset:0
Orientation:forward strand
Alignment:CTCCATGGCGACCGCG
CCGCATAGCAACGGA-
 A G T C A C G T G T A C A T G C G T C A A C G T A C T G A T C G A G T C T C A G C T G A A T G C A G T C A C T G A T G C A C T G
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A A C G T

YY1(Zf)/Promoter/Homer

Match Rank:10
Score:0.50
Offset:0
Orientation:forward strand
Alignment:CTCCATGGCGACCGCG
CAAGATGGCGGC----
 A G T C A C G T G T A C A T G C G T C A A C G T A C T G A T C G A G T C T C A G C T G A A T G C A G T C A C T G A T G C A C T G
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C A C G T A C G T A C G T A C G T