Information for 7-GGTAWCTGCAGGY (Motif 6)

A C T G A C T G C G A T C G T A C G T A A T G C C G A T C T A G A G T C C G T A A C T G C T A G A G T C
Reverse Opposite:
C T A G A G T C G T A C A C G T A C T G A G T C C G T A A T C G C G A T A C G T C G T A A G T C A G T C
p-value:1e-13
log p-value:-3.140e+01
Information Content per bp:1.905
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.3 +/- 12.7bp
Average Position of motif in Background54.0 +/- 9.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GGTAWCTGCAGGY--
GGGTTACTANAGGTCA
 A C G T A C T G A C T G C G A T C G T A C G T A A T G C C G A T C T A G A G T C C G T A A C T G C T A G A G T C A C G T A C G T
C T A G C A T G C A T G A G C T G A C T C G T A G A T C A G C T G T C A A T G C T C G A C T A G C A T G A C G T A G T C C T G A

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:2
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----GGTAWCTGCAGGY--
NNGAGGTTACTNNAGGTCA
 A C G T A C G T A C G T A C G T A C T G A C T G C G A T C G T A C G T A A T G C C G A T C T A G A G T C C G T A A C T G C T A G A G T C A C G T A C G T
T G A C G T C A T C A G T C G A C A T G C A T G A G C T G A C T G C T A G A T C G A C T G A C T A G C T T C G A C T A G C A T G C A G T A G T C T C G A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GGTAWCTGCAGGY
--DCTCAGCAGG-
 A C T G A C T G C G A T C G T A C G T A A T G C C G A T C T A G A G T C C G T A A C T G C T A G A G T C
A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T

Spz1/MA0111.1/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GGTAWCTGCAGGY
AGGGTAACAGC----
 A C G T A C G T A C T G A C T G C G A T C G T A C G T A A T G C C G A T C T A G A G T C C G T A A C T G C T A G A G T C
C T G A A T C G C T A G A C T G C A G T C G T A C G T A T A G C C T G A A C T G T A G C A C G T A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:GGTAWCTGCAGGY----
-----SDGCAGGTGCNS
 A C T G A C T G C G A T C G T A C G T A A T G C C G A T C T A G A G T C C G T A A C T G C T A G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

GFY(?)/Promoter/Homer

Match Rank:6
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GGTAWCTGCAGGY
GGGAATTGTAGT-
 A C T G A C T G C G A T C G T A C G T A A T G C C G A T C T A G A G T C C G T A A C T G C T A G A G T C
C A T G T C A G T C A G T C G A T C G A G C A T A C G T A C T G A C G T C T G A A T C G A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GGTAWCTGCAGGY--
---CACAGCAGGGGG
 A C T G A C T G C G A T C G T A C G T A A T G C C G A T C T A G A G T C C G T A A C T G C T A G A G T C A C G T A C G T
A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:8
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GGTAWCTGCAGGY----
--DCHCAGCAGGRGGCC
 A C T G A C T G C G A T C G T A C G T A A T G C C G A T C T A G A G T C C G T A A C T G C T A G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:GGTAWCTGCAGGY---
------NNCAGGTGNN
 A C T G A C T G C G A T C G T A C G T A A T G C C G A T C T A G A G T C C G T A A C T G C T A G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G

SNAI2/MA0745.1/Jaspar

Match Rank:10
Score:0.53
Offset:6
Orientation:forward strand
Alignment:GGTAWCTGCAGGY--
------AACAGGTGT
 A C T G A C T G C G A T C G T A C G T A A T G C C G A T C T A G A G T C C G T A A C T G C T A G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T