Information for 6-GGAAATTCCCCCA (Motif 5)

C T A G A C T G C T G A G T C A G T C A A C G T A G C T A G T C A G T C G T A C G T A C G T A C C G T A
Reverse Opposite:
G A C T A C T G A C T G A C T G A C T G T C A G C T G A C G T A C A G T A C G T A G C T A G T C G A T C
p-value:1e-14
log p-value:-3.306e+01
Information Content per bp:1.789
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.22%
Number of Background Sequences with motif13.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets43.0 +/- 26.8bp
Average Position of motif in Background68.8 +/- 13.9bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.85
Offset:0
Orientation:forward strand
Alignment:GGAAATTCCCCCA
GGAAATTCCC---
 C T A G A C T G C T G A G T C A G T C A A C G T A G C T A G T C A G T C G T A C G T A C G T A C C G T A
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:GGAAATTCCCCCA
GGAAATTCCC---
 C T A G A C T G C T G A G T C A G T C A A C G T A G C T A G T C A G T C G T A C G T A C G T A C C G T A
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:3
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--GGAAATTCCCCCA
NGGGGATTTCCC---
 A C G T A C G T C T A G A C T G C T G A G T C A G T C A A C G T A G C T A G T C A G T C G T A C G T A C G T A C C G T A
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C A C G T A C G T A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:4
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:GGAAATTCCCCCA
GGGGATTCCCCC-
 C T A G A C T G C T G A G T C A G T C A A C G T A G C T A G T C A G T C G T A C G T A C G T A C C G T A
A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C A C G T

MF0003.1_REL_class/Jaspar

Match Rank:5
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:GGAAATTCCCCCA
GGAAATCCCC---
 C T A G A C T G C T G A G T C A G T C A A C G T A G C T A G T C A G T C G T A C G T A C G T A C C G T A
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:6
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GGAAATTCCCCCA
GGGGATTTCC----
 A C G T C T A G A C T G C T G A G T C A G T C A A C G T A G C T A G T C A G T C G T A C G T A C G T A C C G T A
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T A C G T A C G T A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:7
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GGAAATTCCCCCA
AGGGGATTCCCCT-
 A C G T C T A G A C T G C T G A G T C A G T C A A C G T A G C T A G T C A G T C G T A C G T A C G T A C C G T A
T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GGAAATTCCCCCA
AGGGGATTCCCCT-
 A C G T C T A G A C T G C T G A G T C A G T C A A C G T A G C T A G T C A G T C G T A C G T A C G T A C C G T A
T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T A C G T

PB0204.1_Zfp740_2/Jaspar

Match Rank:9
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GGAAATTCCCCCA------
--AAATTCCCCCCGGAAGT
 C T A G A C T G C T G A G T C A G T C A A C G T A G C T A G T C A G T C G T A C G T A C G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C T G A C T G A C A G T G C A T G A T C G A T C A G T C A G T C A T G C A T G C T A C G A T C G C T G A C T G A T C A G A G C T

MZF1/MA0056.1/Jaspar

Match Rank:10
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:GGAAATTCCCCCA
------TCCCCA-
 C T A G A C T G C T G A G T C A G T C A A C G T A G C T A G T C A G T C G T A C G T A C G T A C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A G T C G T A C A G T C G T A C T C G A A C G T