Information for 13-TAATTCAGTATSA (Motif 9)

A C G T G T C A G T C A C A G T C A G T G T A C G T C A C T A G G A C T G T C A C G A T A T C G C G T A
Reverse Opposite:
G C A T A T C G C G T A A C G T C T G A A G T C C A G T A C T G G T C A G C T A C A G T A C G T T G C A
p-value:1e-9
log p-value:-2.236e+01
Information Content per bp:1.745
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.43%
Number of Background Sequences with motif50.8
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets45.8 +/- 21.3bp
Average Position of motif in Background50.5 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0068.1_Sox1_1/Jaspar

Match Rank:1
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---TAATTCAGTATSA
AATCAATTCAATAATT
 A C G T A C G T A C G T A C G T G T C A G T C A C A G T C A G T G T A C G T C A C T A G G A C T G T C A C G A T A T C G C G T A
G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

PB0171.1_Sox18_2/Jaspar

Match Rank:2
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----TAATTCAGTATSA
NNNNTGAATTCANNNC--
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A G T C A C A G T C A G T G T A C G T C A C T A G G A C T G T C A C G A T A T C G C G T A
A C T G C A T G G A T C G C T A A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A T A C G A G C T T G A C G A T C A C G T A C G T

PH0147.1_Pou3f2/Jaspar

Match Rank:3
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TAATTCAGTATSA
NNNACTAATTAATTANC-
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A G T C A C A G T C A G T G T A C G T C A C T A G G A C T G T C A C G A T A T C G C G T A
G A T C C T G A G T C A T G C A G A T C C A G T G T C A C G T A C G A T C A G T C T G A C T G A C A G T G C A T G C T A G C A T A T G C A C G T

PH0143.1_Pou2f1/Jaspar

Match Rank:4
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------TAATTCAGTATSA
ATATATTAATTAAGTA---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A G T C A C A G T C A G T G T A C G T C A C T A G G A C T G T C A C G A T A T C G C G T A
C T G A G A C T C T A G G C A T C T G A G C A T G C A T G T C A C G T A C G A T A C G T G C T A C T G A A C T G G C A T C G T A A C G T A C G T A C G T

PH0038.1_Hlx/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TAATTCAGTATSA
TGTAATTAATTATGG
 A C G T A C G T A C G T G T C A G T C A C A G T C A G T G T A C G T C A C T A G G A C T G T C A C G A T A T C G C G T A
C A G T C T A G G A C T G C T A C G T A G A C T G A C T C G T A C T G A G C A T C G A T C T G A C A G T C A T G C A T G

PH0142.1_Pou1f1/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TAATTCAGTATSA-
GATTAATTAATTAAGTC
 A C G T A C G T A C G T A C G T G T C A G T C A C A G T C A G T G T A C G T C A C T A G G A C T G T C A C G A T A T C G C G T A A C G T
C T A G T C G A C G A T C A G T G T C A G C T A C G A T C G A T C G T A C G T A C G A T C A G T G C T A C G T A C A T G C G A T A G T C

PH0173.1_Uncx/Jaspar

Match Rank:7
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----TAATTCAGTATSA
CNCNTTAATTAATTANN-
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A G T C A C A G T C A G T G T A C G T C A C T A G G A C T G T C A C G A T A T C G C G T A
T G A C A T C G A G T C T C A G A G C T G A C T T C G A C G T A G A C T A C G T C T G A C T G A A C G T A G C T C G T A A G C T A C T G A C G T

PH0160.1_Shox2/Jaspar

Match Rank:8
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----TAATTCAGTATSA
CGCGTTAATTAATTGTG-
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A G T C A C A G T C A G T G T A C G T C A C T A G G A C T G T C A C G A T A T C G C G T A
T A G C C A T G G T A C T A C G A G C T G A C T T C G A C G T A G A C T A G C T C T G A C T G A C A G T A G C T T C A G C A G T A T C G A C G T

PH0059.1_Hoxb4/Jaspar

Match Rank:9
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----TAATTCAGTATSA
CGCGTTAATTAATTACC-
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A G T C A C A G T C A G T G T A C G T C A C T A G G A C T G T C A C G A T A T C G C G T A
T A G C C T A G G T A C C T A G G A C T G A C T G T C A C G T A C G A T A C G T C T G A C T G A A G C T G C A T T G C A G T A C A G T C A C G T

MAFK/MA0496.1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TAATTCAGTATSA-
CTGAGTCAGCAATTT
 A C G T A C G T G T C A G T C A C A G T C A G T G T A C G T C A C T A G G A C T G T C A C G A T A T C G C G T A A C G T
G T A C G C A T C T A G C G T A T A C G A G C T G T A C C G T A A C T G A T G C G C T A C G T A G C A T G C A T G C A T