Information for 6-GMTCTCTRGCKCC (Motif 6)

A C T G G T A C A C G T A G T C A C G T A G T C A C G T C T G A A C T G A G T C C A G T A T G C A G T C
Reverse Opposite:
A C T G A T C G G T A C A C T G A G T C A G C T G T C A A C T G C G T A A C T G C G T A A C T G G T A C
p-value:1e-7
log p-value:-1.720e+01
Information Content per bp:1.886
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif10.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets49.7 +/- 21.7bp
Average Position of motif in Background58.9 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GMTCTCTRGCKCC-
-CTGTCTGTCACCT
 A C T G G T A C A C G T A G T C A C G T A G T C A C G T C T G A A C T G A G T C C A G T A T G C A G T C A C G T
A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GMTCTCTRGCKCC-
--TGTCTGDCACCT
 A C T G G T A C A C G T A G T C A C G T A G T C A C G T C T G A A C T G A G T C C A G T A T G C A G T C A C G T
A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:3
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GMTCTCTRGCKCC
AGGTCTCTAACC--
 A C G T A C T G G T A C A C G T A G T C A C G T A G T C A C G T C T G A A C T G A G T C C A G T A T G C A G T C
C T G A T C A G A C T G C A G T A G T C G A C T A G T C A C G T C G T A G C T A A T G C G A T C A C G T A C G T

E2F1/MA0024.3/Jaspar

Match Rank:4
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GMTCTCTRGCKCC---
----TTTGGCGCCAAA
 A C T G G T A C A C G T A G T C A C G T A G T C A C G T C T G A A C T G A G T C C A G T A T G C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C G A T C A G T T C A G A T C G A T G C C T A G A T G C A T G C G C T A G C T A C G T A

PB0112.1_E2F2_2/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GMTCTCTRGCKCC-----
-NNNNTTGGCGCCGANNN
 A C T G G T A C A C G T A G T C A C G T A G T C A C G T C T G A A C T G A G T C C A G T A T G C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T T A G C T G A C A G C T A G C T C A G T G A C T C T A G A T C G G T A C A C T G T A G C G A T C C T A G G C T A T C G A A T C G C A T G

PB0113.1_E2F3_2/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GMTCTCTRGCKCC-----
-NNNNTTGGCGCCGANNN
 A C T G G T A C A C G T A G T C A C G T A G T C A C G T C T G A A C T G A G T C C A G T A T G C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T T A C G T A G C A C G T G A C T A C G T G C A T C T A G A T C G G T A C A C T G A T G C A G T C C T A G G C T A C T A G A T G C C A G T

POL013.1_MED-1/Jaspar

Match Rank:7
Score:0.56
Offset:8
Orientation:forward strand
Alignment:GMTCTCTRGCKCC-
--------GCTCCG
 A C T G G T A C A C G T A G T C A C G T A G T C A C G T C T G A A C T G A G T C C A G T A T G C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GMTCTCTRGCKCC
-GGCTCYAKCAYC
 A C T G G T A C A C G T A G T C A C G T A G T C A C G T C T G A A C T G A G T C C A G T A T G C A G T C
A C G T C A T G A C T G A G T C A C G T A G T C G A T C C G T A A C T G T A G C C T G A A G C T T A G C

ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GMTCTCTRGCKCC---
-NGNTCTAGAACCNGV
 A C T G G T A C A C G T A G T C A C G T A G T C A C G T C T G A A C T G A G T C C A G T A T G C A G T C A C G T A C G T A C G T
A C G T C T G A T C A G G C T A A G C T A G T C G A C T C T G A C T A G T G C A C T G A A G T C G T A C G A T C A C T G T C G A

PB0060.1_Smad3_1/Jaspar

Match Rank:10
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---GMTCTCTRGCKCC-
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C T G G T A C A C G T A G T C A C G T A G T C A C G T C T G A A C T G A G T C C A G T A T G C A G T C A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G