Information for 5-CTGGCTGCMGSCAGCG (Motif 2)

A G T C A C G T A C T G A C T G A G T C A C G T A T C G A G T C G T C A A C T G A T C G A G T C C G T A A C T G T A G C A C T G
Reverse Opposite:
A G T C A T C G A G T C A C G T C T A G A T C G G T A C A C G T T A C G A T G C C G T A A C T G A G T C A G T C C G T A A C T G
p-value:1e-10
log p-value:-2.503e+01
Information Content per bp:1.832
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.0 +/- 17.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CTGGCTGCMGSCAGCG
--NGCTN---------
 A G T C A C G T A C T G A C T G A G T C A C G T A T C G A G T C G T C A A C T G A T C G A G T C C G T A A C T G T A G C A C T G
A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CTGGCTGCMGSCAGCG
TWGTCTGV--------
 A G T C A C G T A C T G A C T G A G T C A C G T A T C G A G T C G T C A A C T G A T C G A G T C C G T A A C T G T A G C A C T G
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CTGGCTGCMGSCAGCG
TTGGCA----------
 A G T C A C G T A C T G A C T G A G T C A C G T A T C G A G T C G T C A A C T G A T C G A G T C C G T A A C T G T A G C A C T G
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:4
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CTGGCTGCMGSCAGCG
GGTCTGGCAT---------
 A C G T A C G T A C G T A G T C A C G T A C T G A C T G A G T C A C G T A T C G A G T C G T C A A C T G A T C G A G T C C G T A A C T G T A G C A C T G
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CTGGCTGCMGSCAGCG--
AACCGGTTNNAACCGGTTTN
 A C G T A C G T A G T C A C G T A C T G A C T G A G T C A C G T A T C G A G T C G T C A A C T G A T C G A G T C C G T A A C T G T A G C A C T G A C G T A C G T
C T G A C T G A A T G C G A T C C T A G A T C G G A C T G A C T A G C T C T A G C T G A C T G A A T G C G A T C C T A G A T C G G A C T G A C T A G C T A C T G

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCTGCMGSCAGCG
NTTGGCANN--------
 A C G T A G T C A C G T A C T G A C T G A G T C A C G T A T C G A G T C G T C A A C T G A T C G A G T C C G T A A C T G T A G C A C T G
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CTGGCTGCMGSCAGCG
CTGTCTGG--------
 A G T C A C G T A C T G A C T G A G T C A C G T A T C G A G T C G T C A A C T G A T C G A G T C C G T A A C T G T A G C A C T G
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.50
Offset:0
Orientation:forward strand
Alignment:CTGGCTGCMGSCAGCG
CTGGCAGNCTGCCA--
 A G T C A C G T A C T G A C T G A G T C A C G T A T C G A G T C G T C A A C T G A T C G A G T C C G T A A C T G T A G C A C T G
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:9
Score:0.50
Offset:0
Orientation:forward strand
Alignment:CTGGCTGCMGSCAGCG
CTGTCTGTCACCT---
 A G T C A C G T A C T G A C T G A G T C A C G T A T C G A G T C G T C A A C T G A T C G A G T C C G T A A C T G T A G C A C T G
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T A C G T

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--CTGGCTGCMGSCAGCG
GYCTGGYYTNTGTCA---
 A C G T A C G T A G T C A C G T A C T G A C T G A G T C A C G T A T C G A G T C G T C A A C T G A T C G A G T C C G T A A C T G T A G C A C T G
A T C G A G C T A G T C A C G T A C T G A T C G A G C T G A C T G C A T A G C T G A C T T A C G A G C T G A T C G C T A A C G T A C G T A C G T