Information for 1-GCGCCMYCTRGTGGCC (Motif 1)

A T C G G A T C C A T G A T G C A G T C G T A C G A T C A G T C A G C T C T A G A T C G G A C T A C T G C A T G G A T C T A G C
Reverse Opposite:
A C T G C T A G G T A C G T A C C T G A T A G C G A T C C T G A A C T G C T A G A C T G C T A G A T C G G T A C C T A G T A G C
p-value:1e-145
log p-value:-3.353e+02
Information Content per bp:1.668
Number of Target Sequences with motif151.0
Percentage of Target Sequences with motif18.39%
Number of Background Sequences with motif411.6
Percentage of Background Sequences with motif0.86%
Average Position of motif in Targets54.6 +/- 20.6bp
Average Position of motif in Background49.1 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.97
Offset:-5
Orientation:forward strand
Alignment:-----GCGCCMYCTRGTGGCC
CNNBRGCGCCCCCTGSTGGC-
 A C G T A C G T A C G T A C G T A C G T A T C G G A T C C A T G A T G C A G T C G T A C G A T C A G T C A G C T C T A G A T C G G A C T A C T G C A T G G A T C T A G C
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.96
Offset:-2
Orientation:reverse strand
Alignment:--GCGCCMYCTRGTGGCC-
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A T C G G A T C C A T G A T G C A G T C G T A C G A T C A G T C A G C T C T A G A T C G G A C T A C T G C A T G G A T C T A G C A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.94
Offset:-3
Orientation:forward strand
Alignment:---GCGCCMYCTRGTGGCC-
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A T C G G A T C C A T G A T G C A G T C G T A C G A T C A G T C A G C T C T A G A T C G G A C T A C T G C A T G G A T C T A G C A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0076.1_Sp4_1/Jaspar

Match Rank:4
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----GCGCCMYCTRGTGGCC
GGTCCCGCCCCCTTCTC---
 A C G T A C G T A C G T A C G T A T C G G A T C C A T G A T G C A G T C G T A C G A T C A G T C A G C T C T A G A T C G G A C T A C T G C A T G G A T C T A G C
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C A C G T A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GCGCCMYCTRGTGGCC
--GCCATCTGTT----
 A T C G G A T C C A T G A T G C A G T C G T A C G A T C A G T C A G C T C T A G A T C G G A C T A C T G C A T G G A T C T A G C
A C G T A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GCGCCMYCTRGTGGCC
-GGCCYCCTGCTGDGH
 A T C G G A T C C A T G A T G C A G T C G T A C G A T C A G T C A G C T C T A G A T C G G A C T A C T G C A T G G A T C T A G C
A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GCGCCMYCTRGTGGCC
---CCCCCTGCTGTG-
 A T C G G A T C C A T G A T G C A G T C G T A C G A T C A G T C A G C T C T A G A T C G G A C T A C T G C A T G G A T C T A G C
A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

YY1(Zf)/Promoter/Homer

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCGCCMYCTRGTGGCC
GCCGCCATCTTG-----
 A C G T A T C G G A T C C A T G A T G C A G T C G T A C G A T C A G T C A G C T C T A G A T C G G A C T A C T G C A T G G A T C T A G C
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T A C G T A C G T A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GCGCCMYCTRGTGGCC
-GACCCCCCGCTGTGC
 A T C G G A T C C A T G A T G C A G T C G T A C G A T C A G T C A G C T C T A G A T C G G A C T A C T G C A T G G A T C T A G C
A C G T A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

PB0101.1_Zic1_1/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GCGCCMYCTRGTGGCC
-CACCCCCGGGGGGG-
 A T C G G A T C C A T G A T G C A G T C G T A C G A T C A G T C A G C T C T A G A T C G G A C T A C T G C A T G G A T C T A G C
A C G T A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G A C G T