Information for 3-AAKAAAAKCTKTSKKG (Motif 8)

C G T A C G T A A C T G G T C A C G T A T C G A C G T A A C T G A G T C A C G T A C T G A C G T A T G C A C G T A C G T A C T G
Reverse Opposite:
A G T C G T C A G T C A T A C G C G T A G T A C C G T A A C T G G T A C A C G T A C G T A C G T A C G T G T A C A C G T A C G T
p-value:1e-11
log p-value:-2.674e+01
Information Content per bp:1.842
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.8 +/- 25.9bp
Average Position of motif in Background78.5 +/- 19.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0078.1_Hoxd13/Jaspar

Match Rank:1
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----AAKAAAAKCTKTSKKG
CTACCAATAAAATTCT-----
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G G T C A C G T A T C G A C G T A A C T G A G T C A C G T A C T G A C G T A T G C A C G T A C G T A C T G
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T A C G T A C G T A C G T A C G T A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:2
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----AAKAAAAKCTKTSKKG
AATGCAATAAAATTTAT----
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G G T C A C G T A T C G A C G T A A C T G A G T C A C G T A C T G A C G T A T G C A C G T A C G T A C T G
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T A C G T A C G T A C G T A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:3
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----AAKAAAAKCTKTSKKG
AACCCAATAAAATTCG-----
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G G T C A C G T A T C G A C G T A A C T G A G T C A C G T A C T G A C G T A T G C A C G T A C G T A C T G
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G A C G T A C G T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AAKAAAAKCTKTSKKG
CCAATAAAAA--------
 A C G T A C G T C G T A C G T A A C T G G T C A C G T A T C G A C G T A A C T G A G T C A C G T A C T G A C G T A T G C A C G T A C G T A C T G
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AAKAAAAKCTKTSKKG
NCYAATAAAA---------
 A C G T A C G T A C G T C G T A C G T A A C T G G T C A C G T A T C G A C G T A A C T G A G T C A C G T A C T G A C G T A T G C A C G T A C G T A C T G
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AAKAAAAKCTKTSKKG
CCAATAAAAA--------
 A C G T A C G T C G T A C G T A A C T G G T C A C G T A T C G A C G T A A C T G A G T C A C G T A C T G A C G T A T G C A C G T A C G T A C T G
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MSC/MA0665.1/Jaspar

Match Rank:7
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:AAKAAAAKCTKTSKKG
---AACAGCTGTT---
 C G T A C G T A A C T G G T C A C G T A T C G A C G T A A C T G A G T C A C G T A C T G A C G T A T G C A C G T A C G T A C T G
A C G T A C G T A C G T T C G A T C G A G T A C C G T A A T C G A T G C A C G T T A C G A C G T G A C T A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AAKAAAAKCTKTSKKG
GTCATAAAAN--------
 A C G T A C G T C G T A C G T A A C T G G T C A C G T A T C G A C G T A A C T G A G T C A C G T A C T G A C G T A T G C A C G T A C G T A C T G
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tcf21/MA0832.1/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AAKAAAAKCTKTSKKG
-NCAACAGCTGTTGC-
 C G T A C G T A A C T G G T C A C G T A T C G A C G T A A C T G A G T C A C G T A C T G A C G T A T G C A C G T A C G T A C T G
A C G T T C G A A G T C C T G A T G C A A G T C C G T A T A C G G T A C A C G T A C T G A C G T G A C T C T A G A G T C A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AAKAAAAKCTKTSKKG
CCAATAAAAC--------
 A C G T A C G T C G T A C G T A A C T G G T C A C G T A T C G A C G T A A C T G A G T C A C G T A C T G A C G T A T G C A C G T A C G T A C T G
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T