Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 812)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 48098)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-362	-8.354e+02	0.0000	263.0	32.39%	293.4	0.61%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-289	-6.657e+02	0.0000	266.0	32.76%	590.9	1.24%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-25	-5.895e+01	0.0000	21.0	2.59%	32.6	0.07%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-9	-2.103e+01	0.0000	189.0	23.28%	7239.7	15.14%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-7	-1.824e+01	0.0000	82.0	10.10%	2479.9	5.19%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-7	-1.812e+01	0.0000	30.0	3.69%	519.5	1.09%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-7	-1.753e+01	0.0000	75.0	9.24%	2224.1	4.65%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-7	-1.674e+01	0.0000	100.0	12.32%	3365.6	7.04%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-6	-1.501e+01	0.0000	62.0	7.64%	1820.9	3.81%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-6	-1.495e+01	0.0000	86.0	10.59%	2862.7	5.99%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-6	-1.454e+01	0.0000	44.0	5.42%	1122.4	2.35%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-6	-1.433e+01	0.0000	65.0	8.00%	1985.5	4.15%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-5	-1.344e+01	0.0000	14.0	1.72%	165.8	0.35%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-5	-1.339e+01	0.0000	16.0	1.97%	216.4	0.45%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-5	-1.321e+01	0.0000	53.0	6.53%	1545.4	3.23%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-5	-1.285e+01	0.0001	28.0	3.45%	600.4	1.26%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-5	-1.239e+01	0.0001	15.0	1.85%	207.9	0.43%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-5	-1.202e+01	0.0001	14.0	1.72%	187.3	0.39%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-5	-1.190e+01	0.0001	12.0	1.48%	139.4	0.29%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-5	-1.156e+01	0.0002	32.0	3.94%	791.6	1.66%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-5	-1.155e+01	0.0002	51.0	6.28%	1556.0	3.25%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-4	-1.143e+01	0.0002	78.0	9.61%	2763.9	5.78%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-4	-1.129e+01	0.0002	9.0	1.11%	80.7	0.17%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-4	-1.128e+01	0.0002	14.0	1.72%	200.5	0.42%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-4	-1.123e+01	0.0002	23.0	2.83%	480.7	1.01%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-4	-1.112e+01	0.0002	189.0	23.28%	8341.1	17.45%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-4	-1.083e+01	0.0003	44.0	5.42%	1303.9	2.73%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-4	-1.074e+01	0.0003	48.0	5.91%	1476.7	3.09%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-4	-1.051e+01	0.0003	62.0	7.64%	2105.1	4.40%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-4	-1.016e+01	0.0005	17.0	2.09%	313.8	0.66%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-4	-1.011e+01	0.0005	125.0	15.39%	5172.1	10.82%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-4	-9.979e+00	0.0005	58.0	7.14%	1964.7	4.11%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-4	-9.765e+00	0.0006	22.0	2.71%	494.0	1.03%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-4	-9.642e+00	0.0007	34.0	4.19%	956.5	2.00%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-4	-9.482e+00	0.0008	103.0	12.68%	4145.9	8.67%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-4	-9.414e+00	0.0008	32.0	3.94%	887.3	1.86%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-4	-9.394e+00	0.0008	27.0	3.33%	692.4	1.45%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-4	-9.327e+00	0.0009	35.0	4.31%	1013.4	2.12%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-4	-9.313e+00	0.0009	29.0	3.57%	773.1	1.62%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-3	-9.143e+00	0.0010	33.0	4.06%	941.6	1.97%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-3	-9.039e+00	0.0011	19.0	2.34%	413.0	0.86%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-3	-9.021e+00	0.0011	96.0	11.82%	3851.0	8.05%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-3	-8.990e+00	0.0011	33.0	4.06%	949.9	1.99%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-3	-8.495e+00	0.0017	283.0	34.85%	13898.0	29.07%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-3	-8.491e+00	0.0017	41.0	5.05%	1316.9	2.75%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-3	-8.378e+00	0.0018	27.0	3.33%	738.2	1.54%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-3	-8.246e+00	0.0020	43.0	5.30%	1420.3	2.97%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-3	-7.979e+00	0.0026	91.0	11.21%	3720.3	7.78%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-3	-7.950e+00	0.0026	15.0	1.85%	309.2	0.65%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-3	-7.947e+00	0.0026	43.0	5.30%	1441.7	3.02%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-3	-7.847e+00	0.0028	59.0	7.27%	2182.7	4.57%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-3	-7.500e+00	0.0039	7.0	0.86%	81.4	0.17%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-3	-7.450e+00	0.0040	9.0	1.11%	134.3	0.28%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-3	-7.291e+00	0.0046	5.0	0.62%	40.2	0.08%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-3	-6.956e+00	0.0063	7.0	0.86%	89.8	0.19%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-2	-6.518e+00	0.0096	15.0	1.85%	357.6	0.75%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-2	-6.394e+00	0.0107	19.0	2.34%	515.6	1.08%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-2	-6.386e+00	0.0107	44.0	5.42%	1609.1	3.37%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-2	-6.380e+00	0.0107	28.0	3.45%	889.1	1.86%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-2	-6.066e+00	0.0141	32.0	3.94%	1086.1	2.27%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-2	-5.648e+00	0.0210	15.0	1.85%	392.7	0.82%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-2	-5.522e+00	0.0235	46.0	5.67%	1784.2	3.73%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-2	-5.420e+00	0.0256	170.0	20.94%	8282.9	17.32%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-2	-5.337e+00	0.0274	79.0	9.73%	3452.9	7.22%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-2	-5.279e+00	0.0286	20.0	2.46%	615.0	1.29%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-2	-5.245e+00	0.0291	58.0	7.14%	2402.1	5.02%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-2	-5.175e+00	0.0307	91.0	11.21%	4097.6	8.57%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-2	-5.125e+00	0.0318	105.0	12.93%	4840.2	10.12%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-2	-5.064e+00	0.0333	30.0	3.69%	1072.6	2.24%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-2	-4.993e+00	0.0353	31.0	3.82%	1124.7	2.35%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-2	-4.848e+00	0.0402	5.0	0.62%	71.6	0.15%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-2	-4.678e+00	0.0470	174.0	21.43%	8667.0	18.13%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-2	-4.674e+00	0.0470	11.0	1.35%	279.9	0.59%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-2	-4.661e+00	0.0470	7.0	0.86%	136.3	0.29%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-2	-4.659e+00	0.0470	35.0	4.31%	1342.1	2.81%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-1	-4.520e+00	0.0522	81.0	9.98%	3680.7	7.70%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-1	-4.315e+00	0.0632	37.0	4.56%	1473.3	3.08%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-4.134e+00	0.0748	17.0	2.09%	555.3	1.16%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-1	-4.124e+00	0.0748	16.0	1.97%	512.6	1.07%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-1	-4.053e+00	0.0791	8.0	0.99%	190.1	0.40%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-1	-4.045e+00	0.0791	66.0	8.13%	2974.6	6.22%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-1	-4.039e+00	0.0791	10.0	1.23%	267.7	0.56%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-1	-4.032e+00	0.0791	28.0	3.45%	1068.7	2.24%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-1	-4.002e+00	0.0792	26.0	3.20%	976.3	2.04%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-1	-3.957e+00	0.0818	24.0	2.96%	886.8	1.85%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-1	-3.954e+00	0.0818	69.0	8.50%	3145.1	6.58%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-1	-3.950e+00	0.0818	37.0	4.56%	1513.7	3.17%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-1	-3.720e+00	0.1003	15.0	1.85%	494.7	1.03%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-1	-3.693e+00	0.1018	20.0	2.46%	722.0	1.51%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-1	-3.565e+00	0.1145	62.0	7.64%	2843.6	5.95%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-1	-3.552e+00	0.1147	43.0	5.30%	1863.1	3.90%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-1	-3.479e+00	0.1220	66.0	8.13%	3068.6	6.42%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-3.455e+00	0.1237	16.0	1.97%	557.9	1.17%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-1	-3.396e+00	0.1297	30.0	3.69%	1230.6	2.57%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-1	-3.379e+00	0.1306	22.0	2.71%	843.8	1.77%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-1	-3.332e+00	0.1354	3.0	0.37%	42.8	0.09%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-1	-3.296e+00	0.1389	40.0	4.93%	1745.4	3.65%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-1	-3.279e+00	0.1399	74.0	9.11%	3531.0	7.39%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-1	-3.276e+00	0.1399	42.0	5.17%	1850.4	3.87%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-3.243e+00	0.1422	23.0	2.83%	904.5	1.89%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-1	-3.232e+00	0.1422	82.0	10.10%	3969.8	8.30%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-1	-3.142e+00	0.1542	83.0	10.22%	4042.7	8.46%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-1	-3.130e+00	0.1545	76.0	9.36%	3667.6	7.67%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-1	-3.120e+00	0.1545	37.0	4.56%	1616.9	3.38%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-1	-3.072e+00	0.1606	120.0	14.78%	6083.8	12.73%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-1	-2.970e+00	0.1762	28.0	3.45%	1180.1	2.47%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-1	-2.922e+00	0.1831	19.0	2.34%	742.3	1.55%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-1	-2.867e+00	0.1918	29.0	3.57%	1243.4	2.60%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-2.815e+00	0.2000	21.0	2.59%	851.0	1.78%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-1	-2.795e+00	0.2022	64.0	7.88%	3090.6	6.46%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-1	-2.775e+00	0.2045	33.0	4.06%	1459.2	3.05%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-1	-2.756e+00	0.2064	6.0	0.74%	164.6	0.34%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-1	-2.749e+00	0.2064	17.0	2.09%	662.3	1.39%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-1	-2.698e+00	0.2151	12.0	1.48%	430.2	0.90%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-1	-2.678e+00	0.2174	38.0	4.68%	1732.9	3.62%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-1	-2.662e+00	0.2190	31.0	3.82%	1372.7	2.87%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-1	-2.593e+00	0.2327	69.0	8.50%	3403.8	7.12%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-1	-2.574e+00	0.2351	11.0	1.35%	393.8	0.82%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-1	-2.573e+00	0.2351	33.0	4.06%	1488.6	3.11%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-1	-2.573e+00	0.2351	53.0	6.53%	2544.8	5.32%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-1	-2.507e+00	0.2451	15.0	1.85%	588.9	1.23%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-1	-2.502e+00	0.2451	8.0	0.99%	262.5	0.55%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-1	-2.492e+00	0.2451	24.0	2.96%	1037.1	2.17%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-1	-2.491e+00	0.2451	36.0	4.43%	1657.5	3.47%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-1	-2.490e+00	0.2451	19.0	2.34%	786.1	1.64%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-1	-2.466e+00	0.2452	99.0	12.19%	5083.5	10.63%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-1	-2.427e+00	0.2531	52.0	6.40%	2519.3	5.27%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-1	-2.342e+00	0.2733	14.0	1.72%	555.4	1.16%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-1	-2.325e+00	0.2758	175.0	21.55%	9407.3	19.68%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-1	-2.316e+00	0.2762	11.0	1.35%	413.9	0.87%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-1	-2.313e+00	0.2762	21.0	2.59%	907.7	1.90%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-1	-2.312e+00	0.2762	34.0	4.19%	1581.3	3.31%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-2.274e+00	0.2816	17.0	2.09%	710.2	1.49%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-2.262e+00	0.2828	100.0	12.32%	5197.6	10.87%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-2.256e+00	0.2828	17.0	2.09%	712.5	1.49%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-2.250e+00	0.2828	13.0	1.60%	515.8	1.08%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-2.229e+00	0.2861	13.0	1.60%	517.5	1.08%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-2.193e+00	0.2944	46.0	5.67%	2243.1	4.69%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-2.168e+00	0.2995	3.0	0.37%	69.7	0.15%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-2.165e+00	0.2995	16.0	1.97%	672.6	1.41%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-2.135e+00	0.3052	7.0	0.86%	240.1	0.50%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-2.126e+00	0.3059	66.0	8.13%	3349.7	7.01%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-2.056e+00	0.3257	26.0	3.20%	1201.1	2.51%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-2.047e+00	0.3264	3.0	0.37%	73.7	0.15%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.975e+00	0.3484	15.0	1.85%	643.6	1.35%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.926e+00	0.3632	17.0	2.09%	751.6	1.57%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.900e+00	0.3704	33.0	4.06%	1600.9	3.35%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.855e+00	0.3849	3.0	0.37%	80.3	0.17%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.797e+00	0.4052	12.0	1.48%	511.6	1.07%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.793e+00	0.4052	117.0	14.41%	6310.6	13.20%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-1.755e+00	0.4169	72.0	8.87%	3784.2	7.92%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.753e+00	0.4169	9.0	1.11%	365.1	0.76%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.738e+00	0.4183	14.0	1.72%	620.5	1.30%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.734e+00	0.4183	24.0	2.96%	1147.1	2.40%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.702e+00	0.4282	93.0	11.45%	4983.8	10.42%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-1.691e+00	0.4303	1.0	0.12%	12.6	0.03%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.677e+00	0.4334	16.0	1.97%	732.1	1.53%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.670e+00	0.4339	5.0	0.62%	179.0	0.37%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.667e+00	0.4339	4.0	0.49%	132.0	0.28%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.666e+00	0.4339	14.0	1.72%	629.2	1.32%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.661e+00	0.4339	39.0	4.80%	1976.9	4.14%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.645e+00	0.4339	30.0	3.69%	1487.9	3.11%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.625e+00	0.4397	17.0	2.09%	792.5	1.66%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.608e+00	0.4448	116.0	14.29%	6325.5	13.23%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-1.586e+00	0.4518	52.0	6.40%	2715.4	5.68%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.572e+00	0.4551	18.0	2.22%	853.2	1.78%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.564e+00	0.4560	11.0	1.35%	486.4	1.02%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.561e+00	0.4560	45.0	5.54%	2332.7	4.88%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.547e+00	0.4560	4.0	0.49%	139.3	0.29%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.547e+00	0.4560	4.0	0.49%	139.3	0.29%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.532e+00	0.4601	8.0	0.99%	336.8	0.70%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.521e+00	0.4623	6.0	0.74%	238.0	0.50%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.502e+00	0.4685	9.0	1.11%	390.8	0.82%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.469e+00	0.4813	5.0	0.62%	192.3	0.40%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.454e+00	0.4861	84.0	10.34%	4562.9	9.54%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.452e+00	0.4861	8.0	0.99%	344.4	0.72%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.449e+00	0.4861	11.0	1.35%	500.2	1.05%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.438e+00	0.4861	6.0	0.74%	244.6	0.51%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.412e+00	0.4953	32.0	3.94%	1647.9	3.45%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-1.410e+00	0.4953	22.0	2.71%	1097.1	2.29%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.404e+00	0.4953	32.0	3.94%	1650.0	3.45%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.399e+00	0.4953	53.0	6.53%	2826.0	5.91%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.352e+00	0.5147	2.0	0.25%	58.6	0.12%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.346e+00	0.5150	82.0	10.10%	4489.1	9.39%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.316e+00	0.5277	6.0	0.74%	255.8	0.54%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.315e+00	0.5277	16.0	1.97%	787.7	1.65%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-1.300e+00	0.5304	28.0	3.45%	1451.5	3.04%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.287e+00	0.5344	28.0	3.45%	1454.6	3.04%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-1.267e+00	0.5427	20.0	2.46%	1015.3	2.12%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.226e+00	0.5621	4.0	0.49%	161.1	0.34%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.193e+00	0.5780	5.0	0.62%	215.3	0.45%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.182e+00	0.5812	5.0	0.62%	216.5	0.45%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.162e+00	0.5899	8.0	0.99%	378.0	0.79%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.158e+00	0.5899	7.0	0.86%	324.8	0.68%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.144e+00	0.5949	13.0	1.60%	652.8	1.37%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.129e+00	0.6007	1.0	0.12%	23.4	0.05%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.071e+00	0.6333	4.0	0.49%	174.1	0.36%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.070e+00	0.6333	5.0	0.62%	227.1	0.48%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.035e+00	0.6496	9.0	1.11%	449.6	0.94%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.016e+00	0.6587	45.0	5.54%	2496.9	5.22%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-1.010e+00	0.6595	21.0	2.59%	1127.0	2.36%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-9.997e-01	0.6631	24.0	2.96%	1300.6	2.72%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-9.959e-01	0.6631	4.0	0.49%	181.5	0.38%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-9.930e-01	0.6631	8.0	0.99%	400.4	0.84%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-9.908e-01	0.6631	17.0	2.09%	905.8	1.89%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-9.734e-01	0.6675	56.0	6.90%	3146.9	6.58%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-9.714e-01	0.6675	1.0	0.12%	29.0	0.06%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-9.616e-01	0.6690	61.0	7.51%	3440.4	7.20%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-9.570e-01	0.6690	3.0	0.37%	131.3	0.27%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-9.546e-01	0.6690	28.0	3.45%	1541.4	3.22%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-9.479e-01	0.6690	49.0	6.03%	2752.4	5.76%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-9.315e-01	0.6764	65.0	8.00%	3685.1	7.71%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-9.180e-01	0.6792	1.0	0.12%	30.1	0.06%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-9.180e-01	0.6792	1.0	0.12%	30.0	0.06%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-9.179e-01	0.6792	28.0	3.45%	1553.0	3.25%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-9.020e-01	0.6838	2.0	0.25%	82.7	0.17%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-8.995e-01	0.6838	6.0	0.74%	302.2	0.63%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-8.833e-01	0.6903	90.0	11.08%	5163.2	10.80%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-8.720e-01	0.6950	15.0	1.85%	818.3	1.71%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-8.632e-01	0.6979	10.0	1.23%	534.5	1.12%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-8.617e-01	0.6979	4.0	0.49%	195.9	0.41%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-8.587e-01	0.6979	111.0	13.67%	6403.6	13.39%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-8.566e-01	0.6979	3.0	0.37%	140.2	0.29%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-8.467e-01	0.6979	9.0	1.11%	481.0	1.01%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-8.461e-01	0.6979	3.0	0.37%	141.4	0.30%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-8.411e-01	0.6979	7.0	0.86%	367.8	0.77%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-8.308e-01	0.6987	5.0	0.62%	255.7	0.53%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-8.089e-01	0.7110	15.0	1.85%	833.2	1.74%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-8.070e-01	0.7110	2.0	0.25%	89.1	0.19%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-7.935e-01	0.7158	4.0	0.49%	203.1	0.42%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-7.903e-01	0.7158	27.0	3.33%	1535.7	3.21%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-7.768e-01	0.7215	15.0	1.85%	841.6	1.76%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-7.694e-01	0.7238	166.0	20.44%	9688.3	20.26%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-7.567e-01	0.7299	8.0	0.99%	439.1	0.92%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-7.145e-01	0.7581	29.0	3.57%	1679.2	3.51%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-7.013e-01	0.7649	7.0	0.86%	391.1	0.82%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-6.802e-01	0.7779	7.0	0.86%	395.2	0.83%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-6.800e-01	0.7779	5.0	0.62%	277.4	0.58%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-6.798e-01	0.7779	4.0	0.49%	218.9	0.46%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-6.728e-01	0.7779	4.0	0.49%	219.1	0.46%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-6.651e-01	0.7779	69.0	8.50%	4058.9	8.49%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-6.555e-01	0.7809	3.0	0.37%	162.2	0.34%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-6.497e-01	0.7822	16.0	1.97%	935.6	1.96%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-6.053e-01	0.8144	6.0	0.74%	350.6	0.73%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-6.023e-01	0.8144	2.0	0.25%	108.4	0.23%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-5.929e-01	0.8178	54.0	6.65%	3214.3	6.72%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-5.876e-01	0.8188	26.0	3.20%	1552.7	3.25%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-5.834e-01	0.8190	22.0	2.71%	1315.2	2.75%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-5.823e-01	0.8190	4.0	0.49%	233.0	0.49%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-5.681e-01	0.8250	10.0	1.23%	600.1	1.26%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-5.529e-01	0.8342	25.0	3.08%	1507.2	3.15%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-4.949e-01	0.8806	35.0	4.31%	2136.2	4.47%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-4.824e-01	0.8881	20.0	2.46%	1236.7	2.59%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-4.730e-01	0.8930	79.0	9.73%	4788.0	10.01%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-4.646e-01	0.8935	7.0	0.86%	444.8	0.93%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-4.646e-01	0.8935	7.0	0.86%	444.1	0.93%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-4.599e-01	0.8942	20.0	2.46%	1246.1	2.61%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-4.546e-01	0.8955	43.0	5.30%	2642.7	5.53%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-4.523e-01	0.8955	8.0	0.99%	510.8	1.07%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-4.493e-01	0.8955	4.0	0.49%	258.9	0.54%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-4.342e-01	0.9034	2.0	0.25%	130.3	0.27%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-4.216e-01	0.9114	10.0	1.23%	645.2	1.35%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-4.066e-01	0.9217	13.0	1.60%	838.5	1.75%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-4.001e-01	0.9241	135.0	16.63%	8203.7	17.16%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-3.975e-01	0.9241	40.0	4.93%	2499.5	5.23%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-3.917e-01	0.9249	85.0	10.47%	5220.5	10.92%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-3.860e-01	0.9267	1.0	0.12%	67.1	0.14%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-3.859e-01	0.9267	10.0	1.23%	658.8	1.38%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-3.836e-01	0.9267	11.0	1.35%	722.5	1.51%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-3.781e-01	0.9267	1.0	0.12%	68.4	0.14%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-3.690e-01	0.9287	16.0	1.97%	1042.3	2.18%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-3.670e-01	0.9287	20.0	2.46%	1292.9	2.70%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-3.660e-01	0.9287	80.0	9.85%	4945.6	10.34%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-3.599e-01	0.9287	23.0	2.83%	1482.9	3.10%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-3.505e-01	0.9323	119.0	14.66%	7306.1	15.28%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-3.489e-01	0.9323	78.0	9.61%	4842.9	10.13%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-3.406e-01	0.9347	11.0	1.35%	740.8	1.55%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-3.330e-01	0.9385	31.0	3.82%	1994.7	4.17%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-3.300e-01	0.9385	16.0	1.97%	1062.3	2.22%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-3.172e-01	0.9466	71.0	8.74%	4452.4	9.31%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-3.140e-01	0.9466	69.0	8.50%	4334.9	9.07%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-3.108e-01	0.9466	2.0	0.25%	153.6	0.32%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-2.918e-01	0.9607	20.0	2.46%	1337.4	2.80%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-2.847e-01	0.9642	5.0	0.62%	370.8	0.78%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-2.841e-01	0.9642	59.0	7.27%	3757.8	7.86%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-2.802e-01	0.9642	21.0	2.59%	1408.2	2.95%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-2.670e-01	0.9711	73.0	8.99%	4632.6	9.69%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-2.653e-01	0.9711	2.0	0.25%	164.3	0.34%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-2.637e-01	0.9711	1.0	0.12%	87.0	0.18%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-2.586e-01	0.9711	1.0	0.12%	87.4	0.18%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-2.535e-01	0.9711	45.0	5.54%	2929.2	6.13%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-2.420e-01	0.9786	41.0	5.05%	2693.4	5.63%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-2.403e-01	0.9786	12.0	1.48%	857.4	1.79%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-2.402e-01	0.9786	23.0	2.83%	1565.5	3.27%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-2.321e-01	0.9786	14.0	1.72%	993.9	2.08%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-2.236e-01	0.9833	8.0	0.99%	601.5	1.26%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-2.200e-01	0.9836	7.0	0.86%	535.3	1.12%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-2.165e-01	0.9837	4.0	0.49%	327.4	0.68%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-2.135e-01	0.9837	1.0	0.12%	97.2	0.20%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-2.128e-01	0.9837	12.0	1.48%	875.5	1.83%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-2.084e-01	0.9837	14.0	1.72%	1010.4	2.11%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.998e-01	0.9870	9.0	1.11%	683.1	1.43%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.841e-01	0.9993	4.0	0.49%	342.2	0.72%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.817e-01	0.9993	36.0	4.43%	2449.3	5.12%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.799e-01	0.9993	15.0	1.85%	1099.8	2.30%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.683e-01	1.0000	25.0	3.08%	1763.3	3.69%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-1.626e-01	1.0000	6.0	0.74%	499.9	1.05%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.525e-01	1.0000	61.0	7.51%	4063.6	8.50%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.485e-01	1.0000	24.0	2.96%	1722.7	3.60%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.449e-01	1.0000	7.0	0.86%	583.8	1.22%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.369e-01	1.0000	4.0	0.49%	369.3	0.77%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-1.360e-01	1.0000	23.0	2.83%	1673.5	3.50%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.350e-01	1.0000	14.0	1.72%	1076.0	2.25%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-1.323e-01	1.0000	11.0	1.35%	874.2	1.83%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.297e-01	1.0000	17.0	2.09%	1284.0	2.69%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.281e-01	1.0000	3.0	0.37%	297.5	0.62%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-1.243e-01	1.0000	15.0	1.85%	1156.0	2.42%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.223e-01	1.0000	5.0	0.62%	456.0	0.95%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.120e-01	1.0000	1.0	0.12%	132.9	0.28%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-9.772e-02	1.0000	12.0	1.48%	984.1	2.06%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-9.474e-02	1.0000	55.0	6.77%	3810.1	7.97%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-9.211e-02	1.0000	2.0	0.25%	238.2	0.50%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-9.076e-02	1.0000	26.0	3.20%	1944.1	4.07%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-8.940e-02	1.0000	32.0	3.94%	2342.8	4.90%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-8.871e-02	1.0000	1.0	0.12%	145.7	0.30%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-8.823e-02	1.0000	2.0	0.25%	241.8	0.51%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-8.792e-02	1.0000	15.0	1.85%	1208.0	2.53%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-8.714e-02	1.0000	1.0	0.12%	146.5	0.31%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-7.858e-02	1.0000	10.0	1.23%	870.9	1.82%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-7.666e-02	1.0000	10.0	1.23%	873.3	1.83%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-7.609e-02	1.0000	12.0	1.48%	1017.9	2.13%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-7.440e-02	1.0000	38.0	4.68%	2771.3	5.80%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-7.265e-02	1.0000	28.0	3.45%	2117.5	4.43%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-5.790e-02	1.0000	62.0	7.64%	4376.2	9.15%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-5.679e-02	1.0000	9.0	1.11%	835.3	1.75%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-5.394e-02	1.0000	13.0	1.60%	1133.5	2.37%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-5.021e-02	1.0000	4.0	0.49%	457.8	0.96%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-3.385e-02	1.0000	96.0	11.82%	6672.4	13.96%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-3.353e-02	1.0000	54.0	6.65%	3982.7	8.33%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-3.324e-02	1.0000	15.0	1.85%	1340.5	2.80%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-3.144e-02	1.0000	8.0	0.99%	823.3	1.72%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-2.502e-02	1.0000	17.0	2.09%	1522.6	3.18%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.809e-02	1.0000	5.0	0.62%	630.0	1.32%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.494e-02	1.0000	11.0	1.35%	1136.4	2.38%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.372e-02	1.0000	47.0	5.79%	3693.0	7.72%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-1.199e-02	1.0000	3.0	0.37%	480.1	1.00%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.083e-02	1.0000	1.0	0.12%	266.1	0.56%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.968e-03	1.0000	16.0	1.97%	1749.4	3.66%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.150e-04	1.0000	16.0	1.97%	2038.4	4.26%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	0.000e+00	1.0000	0.0	0.00%	58.3	0.12%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	0.000e+00	1.0000	0.0	0.00%	78.4	0.16%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	205.2	0.43%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	0.000e+00	1.0000	0.0	0.00%	38.9	0.08%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	31.1	0.06%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	0.000e+00	1.0000	0.0	0.00%	102.5	0.21%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	0.000e+00	1.0000	0.0	0.00%	80.9	0.17%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	7.0	0.01%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	14.8	0.03%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	65.0	0.14%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	16.6	0.03%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.5	0.00%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	24.7	0.05%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	9.5	0.02%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	0.000e+00	1.0000	0.0	0.00%	144.6	0.30%