Information for 9-YMCARAGGTCAGY (Motif 5)

A G T C G T C A A G T C C G T A C T A G C G T A A C T G A T C G A G C T A G T C C G T A A C T G A G C T
Reverse Opposite:
T C G A A G T C A C G T A C T G C T G A A T G C A G T C A C G T A G T C A C G T A C T G A C G T C T A G
p-value:1e-13
log p-value:-3.107e+01
Information Content per bp:1.871
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.5 +/- 31.2bp
Average Position of motif in Background74.8 +/- 6.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.88
Offset:2
Orientation:forward strand
Alignment:YMCARAGGTCAGY
--CAAAGGTCAG-
 A G T C G T C A A G T C C G T A C T A G C G T A A C T G A T C G A G C T A G T C C G T A A C T G A G C T
A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:2
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-YMCARAGGTCAGY--
TCTCAAAGGTCACCTG
 A C G T A G T C G T C A A G T C C G T A C T A G C G T A A C T G A T C G A G C T A G T C C G T A A C T G A G C T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

NR2F1/MA0017.2/Jaspar

Match Rank:3
Score:0.77
Offset:2
Orientation:forward strand
Alignment:YMCARAGGTCAGY--
--CAAAGGTCAAGGG
 A G T C G T C A A G T C C G T A C T A G C G T A A C T G A T C G A G C T A G T C C G T A A C T G A G C T A C G T A C G T
A C G T A C G T G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:4
Score:0.77
Offset:3
Orientation:forward strand
Alignment:YMCARAGGTCAGY
---AGRGGTCA--
 A G T C G T C A A G T C C G T A C T A G C G T A A C T G A T C G A G C T A G T C C G T A A C T G A G C T
A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:5
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-YMCARAGGTCAGY--
TCTCAAAGGTCACGAG
 A C G T A G T C G T C A A G T C C G T A C T A G C G T A A C T G A T C G A G C T A G T C C G T A A C T G A G C T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:6
Score:0.75
Offset:3
Orientation:forward strand
Alignment:YMCARAGGTCAGY
---TRAGGTCA--
 A G T C G T C A A G T C C G T A C T A G C G T A A C T G A T C G A G C T A G T C C G T A A C T G A G C T
A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:7
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-YMCARAGGTCAGY
ANGNAAAGGTCA--
 A C G T A G T C G T C A A G T C C G T A C T A G C G T A A C T G A T C G A G C T A G T C C G T A A C T G A G C T
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.72
Offset:5
Orientation:forward strand
Alignment:YMCARAGGTCAGY
-----AGGTCA--
 A G T C G T C A A G T C C G T A C T A G C G T A A C T G A T C G A G C T A G T C C G T A A C T G A G C T
A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:9
Score:0.71
Offset:4
Orientation:forward strand
Alignment:YMCARAGGTCAGY
----AAGGTCAC-
 A G T C G T C A A G T C C G T A C T A G C G T A A C T G A T C G A G C T A G T C C G T A A C T G A G C T
A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:YMCARAGGTCAGY
--TCAAGGTCAN-
 A G T C G T C A A G T C C G T A C T A G C G T A A C T G A T C G A G C T A G T C C G T A A C T G A G C T
A C G T A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T