Information for 13-ATTAAAGTCA (Motif 20)

C G T A A C G T A C G T C G T A C G T A C G T A A C T G A C G T A G T C T C G A
Reverse Opposite:
A G C T A C T G C G T A A G T C A C G T A C G T A C G T C G T A C G T A A C G T
p-value:1e-7
log p-value:-1.631e+01
Information Content per bp:1.942
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif12.1
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets53.7 +/- 23.1bp
Average Position of motif in Background37.5 +/- 21.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid3a/MA0151.1/Jaspar

Match Rank:1
Score:0.77
Offset:0
Orientation:forward strand
Alignment:ATTAAAGTCA
ATTAAA----
 C G T A A C G T A C G T C G T A C G T A C G T A A C T G A C G T A G T C T C G A
C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T A C G T A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:2
Score:0.72
Offset:2
Orientation:forward strand
Alignment:ATTAAAGTCA-
--AAAAGTCAA
 C G T A A C G T A C G T C G T A C G T A C G T A A C T G A C G T A G T C T C G A A C G T
A C G T A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A

GSX2/MA0893.1/Jaspar

Match Rank:3
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----ATTAAAGTCA
ACTAATTAAA----
 A C G T A C G T A C G T A C G T C G T A A C G T A C G T C G T A C G T A C G T A A C T G A C G T A G T C T C G A
G T C A A T G C G A C T G T C A C G T A G C A T G C A T G C T A T C G A G T C A A C G T A C G T A C G T A C G T

Arid3b/MA0601.1/Jaspar

Match Rank:4
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---ATTAAAGTCA
NTAATTAATAT--
 A C G T A C G T A C G T C G T A A C G T A C G T C G T A C G T A C G T A A C T G A C G T A G T C T C G A
A C G T A C G T C G T A C G T A C G A T A C G T C G T A C G T A C G A T C G T A A C G T A C G T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:5
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----ATTAAAGTCA
NGCAATTAAA----
 A C G T A C G T A C G T A C G T C G T A A C G T A C G T C G T A C G T A C G T A A C T G A C G T A G T C T C G A
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T A C G T A C G T

NKX6-2/MA0675.1/Jaspar

Match Rank:6
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---ATTAAAGTCA
CTAATTAA-----
 A C G T A C G T A C G T C G T A A C G T A C G T C G T A C G T A C G T A A C T G A C G T A G T C T C G A
A T G C G A C T G T C A G C T A C G A T G C A T C T G A G C T A A C G T A C G T A C G T A C G T A C G T

NKX6-1/MA0674.1/Jaspar

Match Rank:7
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---ATTAAAGTCA
GTAATTAA-----
 A C G T A C G T A C G T C G T A A C G T A C G T C G T A C G T A C G T A A C T G A C G T A G T C T C G A
T A C G A G C T G T C A G T C A A C G T G C A T T C G A G C T A A C G T A C G T A C G T A C G T A C G T

MNX1/MA0707.1/Jaspar

Match Rank:8
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----ATTAAAGTCA
GGTAATTAAA----
 A C G T A C G T A C G T A C G T C G T A A C G T A C G T C G T A C G T A C G T A A C T G A C G T A G T C T C G A
C T A G T A C G A G C T G T C A G T C A G A C T C G A T C G T A C G T A G T C A A C G T A C G T A C G T A C G T

HOXA5/MA0158.1/Jaspar

Match Rank:9
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-ATTAAAGTCA
AATTAGTG---
 A C G T C G T A A C G T A C G T C G T A C G T A C G T A A C T G A C G T A G T C T C G A
T G C A C G T A A G C T C G A T G C T A T A C G G A C T A C T G A C G T A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:10
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------ATTAAAGTCA
AGAGCCATAAAATTCG
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T C G T A C G T A C G T A A C T G A C G T A G T C T C G A
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G